Callithrix jacchus (white-tufted-ear marmoset): 103788236
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Entry
103788236 CDS
T03264
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03082
ATP-dependent chromatin remodeling
cjc04714
Thermogenesis
cjc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103788236 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
103788236 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
103788236 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
103788236 (SMARCC1)
03036 Chromosome and associated proteins [BR:
cjc03036
]
103788236 (SMARCC1)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103788236 (SMARCC1)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103788236 (SMARCC1)
PBAF complex
103788236 (SMARCC1)
GBAF(ncBAF) complex
103788236 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
DUF919
Chromo
SpeFL
Motif
Other DBs
NCBI-GeneID:
103788236
NCBI-ProteinID:
XP_035131117
Ensembl:
ENSCJAG00000002511
UniProt:
F7BMK3
LinkDB
All DBs
Position
15:complement(24029186..24216480)
Genome browser
AA seq
1105 aa
AA seq
DB search
MAAVAGGGGGPGAAVGSTGSGAAAVAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWL
GKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLC
HILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNSCLTRPTIYLIPDIDLK
LANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQEDEEWLRPVMRKDKQVLVHWGFYPDS
YDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQR
ISAKNEEPVRSPEKRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQTSLYGKRRSQK
EEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLKKDSENTPVKGGTVADLDEQEEETVTTG
GKEDEDPTKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKN
KSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQV
DPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKSKEKPIDLQNF
GLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECIL
HFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAAL
EEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEE
KMEADSDGQQPEKAENKVENEMDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENK
ELTDKCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALL
VETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQME
QQQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPG
PGSMMPGQHMAGRMIPTVAANIHPSGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQ
QQPPPPPPADGVPPPAPGPPASAAP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtagcgggcggcggtggcggcccaggggcagcagtaggctccacgggctcg
ggtgctgctgcggtagcagcaggcctggccgtttatcggcggaaggacgggggcccggcc
accaagttttgggagagcccggagacggtgtctcagctggattcagtgcgggtatggctg
ggcaagcactacaagaagtatgttcatgcggatgctcctaccaataaaacgctggctggg
ctggtagtacagcttcttcagttccaggaagatgcctttgggaagcacgtcaccaacccg
gccttcactaaactccctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgt
cacattcttggggctgcttacaagtataaaaatgaacagggatggcggaggtttgaccta
cagaacccatcccgaatggatcgtaatgtggaaatgtttatgaacattgaaaaaacattg
gtgcagaacagttgtttgaccagacccaccatctacctcattccagacattgatctgaag
ttggctaacaaattgaaagatattatcaaacgacatcagggaacatttactgatgagaag
tcaaaagcttcccaccacatttatccatattcttcctcacaagaggatgaagaatggttg
agaccggtgatgagaaaagacaagcaagtgttagtgcattggggcttttacccagacagc
tatgatacttgggtccatagtaatgatgttgatgctgaaattgaagatccaccaattcca
gaaaagccatggaaggttcatgtgaaatggattttggacactgatattttcaacgaatgg
atgaatgaggaggattatgaggtggatgaaaataggaagcctgtgagttttcgtcagcgg
atttcagcaaagaatgaagagccagtcagaagtccagaaaaaagagatagaaaagcatca
gctaatgctagaaagaggaaacattcgccttcgcctcctcctcccacaccaacagaatca
cggaagaagagtggaaagaaaggccaaactagcctttatgggaagcgtagaagtcagaaa
gaggaagatgaacaagaagatctaaccaaggatatggaagacccaacacctgtacccaat
atagaagaagtagtacttcccaaaaatgtgaacctaaagaaagatagtgaaaatacacct
gttaaaggaggaactgtagcagatctagatgagcaggaggaagaaacagtcacaacagga
ggaaaggaagatgaagatcctaccaaaggtgaccagagtcggtcggttgaccctggtgaa
gataatgtgacagagcagaccaatcacattattattcctagttatgcatcatggtttgat
tataactgtattcatgtgattgaacggcgtgctcttcctgagttcttcaatggaaaaaac
aaatccaagactccagaaatatacttggcatatcgaaattttatgattgacacgtatcgc
ctaaacccccaagagtacttaaccagcactgcttgtcggaggaacttaactggagatgta
tgtgctgtaatgagggtccatgcctttttagagcagtggggacttgttaattaccaagtt
gacccggaaagtagacccatggcaatgggaccgcctcctactcctcattttaatgtatta
gctgatacaccctctgggcttgtgcctctgcatcttcgatcacctcaggtccctgctgct
caacagatgctaaattttcctgagaaaagcaaggaaaaaccaattgatttgcagaacttt
ggccttcgtactgacatttactccaagaaaacattagcaaagagtaagggtgctagtgct
ggaagagaatggactgaacaggagacccttctacttttggaggccctggagatgtacaag
gacgattggaataaagtgtcagaacatgtcggaagtcgtactcaggatgaatgtatcctc
cactttttgagacttcccattgaggacccataccttgagaattcagatgcttcccttggg
cctttggcctaccagcctgtcccctttagtcagtcaggaaatccagtcatgagtactgtt
gcttttttggcatctgtggtggaccctcgcgtggcatctgctgcagcaaaagcggcttta
gaggaattttctcgggtccgggaggaggtaccactggaattggttgaagctcatgtcaag
aaagtacaagaagcagcacgagcctctgggaaagtggatcccacctacggcctagagagc
agctgcattgcgggcacagggcccgatgagccagagaagcttgaaggagctgaagaggaa
aaaatggaagccgattctgatggtcagcagcctgaaaaggcagaaaacaaagtggaaaat
gaaatggatgaaggtgataaagcacaagatggagaaaatgaaaaaaatagtgaaaaggaa
caggatagtgaagtgagtgaggataccaaatcagaagaaaaggagactgaagagaacaaa
gaactcactgataaatgtaaagaaagagaaagtgatactgggaagaagaaagtagaacat
gaaatttccgaaggaaatgttgccacagccgcagcagctgctcttgcctcagctgctacc
aaagccaagcacctggctgcagtggaagaaagaaagatcaagtccctggtagctctcctg
gttgagacacaaatgaagaaactagagatcaaacttcgacattttgaagagctggaaact
atcatggacagagagaaagaagctctagaacaacagaggcagcagttgcttactgaacgc
caaaacttccacatggaacagttgaagtatgctgaattacgagcacgacagcaaatggaa
cagcagcagcatggccagaaccctcaacaggcacaccagcactcaggaggacctggcctg
gccccacttggagcagcagggcaccctggcatgatgcctcatcaacagccccctccctac
cctctaatgcaccaccagatgccaccacctcatccaccccagccaggtcagataccaggc
ccaggttccatgatgcctggacagcacatggcaggccgcatgattcccactgttgcagcc
aacatccacccctctgggagtggccccacccctcctggcatgcctccaatgccaggaaac
atcttaggaccccgggtacccctgacagcacctaatggcatgtatccccctccaccacag
cagcagccgccgccaccaccacctgcagatggggttcctcctcctgctccaggcccgcca
gcctcagctgctccttag
DBGET
integrated database retrieval system
