Callithrix jacchus (white-tufted-ear marmoset): 108592385
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Entry
108592385 CDS
T03264
Symbol
SCN9A
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
108592385 (SCN9A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
108592385 (SCN9A)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108592385 (SCN9A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
108592385
NCBI-ProteinID:
XP_054114286
Ensembl:
ENSCJAG00000006358
LinkDB
All DBs
Position
6:60019001..60213620
Genome browser
AA seq
1988 aa
AA seq
DB search
MAMLPPPGPQSFVHFTKQSLALIEQRIAEGKSKEPKEEKKDDDEEGPKPSSDLEAGKQLP
FIYGDIPPSLLSEPLEDLDPYYADKKTFIVLNKGKTIFRFNAAPALYMLSPFSPLRRISI
KILVHSLFSMLIMCTILTNCIFMTLYNPPEWTKIVEYTFTGIYTFESLVKILARGFCVGE
FTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRDSLENNETLESIMDTLEDEEDFR
KYFYYLEGSKDALLCGFSTDSGQCPEGYTCVKAGRNPDYGYTSFDTFSWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSIGRSRIMGLSESSSETSKLSSKSAKERRNRR
KKKNQKKLSSGEEKGDVEKLSKSESEESIRRKSFHLGVEGHRRAREKRLSTPNQSPLSIR
GSLFSARRSSRTSLFSFKGRGRDIGSETEFADDEHSIFGDNESRRGSLFVPHRPPERRSS
NISQASRSSPMLPVNGKMHSAVDCNGVVSLVDGRTALMLPNGQLLPEVIIDKATSDDSGT
TNRIHKKRRCSSYLLSEDMLNDPNLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHK
FLIWNCSPHWIKFKKCVYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLTIGN
LVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLL
RVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIN
DDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVL
NLFLALLLSSFSSDNLTAIEEDPDANNLQIAVSRIKKGINYVKQTLREFLLKAFSKKPKI
SREIRQSEDLNTKKENYISNHTLAEMSKGHKFLKEKDKIGHFGSSVDKYLMEESDGQSFI
HNPSLTVTVPIAPGESDLENMNTEELSSDSDSEYSKGRLNQSSSSECSTVDNPLPGEGEE
AEAEPVNSDEPEACFTDGCVRRFSCCQVNIESGKGKIWWNIRKTCYKIVEHSWFESFIVL
MILLSSGALAFEDIYIERKKTIKIILEYADKIFTYVFILEMLLKWVAYGYKTYFTNAWCW
LDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPS
IMNVLLVCLIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFALMNVSQNV
RWKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVDSVNVDKQPEYEYSLYMYIYFVIF
IIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP
GNKFQGCIFDLVTNQAFDISIMVLICLNMVTMMVEKEDQSKYMTGVLNWINLVFIILFTG
ECALKLISLRHYYFTVGWNIFDFVVVIISIVGMFLADMIEKYFVSPTLFRVIRLARIGRI
LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEDGINDMFN
FETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSVEGDCGNPSVGIFYF
VSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEYS
KLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLR
SQMEERFMSANPSKMSYEPITTTLKRKQEDVSATVIQRAYRRYRLRQNVKNISSIYIKDG
DRDDDLLNKKVTGFDNVIENSSPEKTDATSSTTSPPSYDSVTKPDKEKYEQDRTEKEDKG
KDSKESKK
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgttgcctcccccaggacctcagagctttgtccacttcacaaaacaatctctt
gcactcattgaacaacgcattgctgaaggaaaatcaaaggaacccaaagaagaaaagaaa
gacgatgatgaagaaggcccaaagccaagcagtgacttggaagctggaaaacagctgccc
ttcatctatggggacattcctccaagcctgctgtcagagcccctggaggacctggatccc
tactatgcagacaaaaagactttcatagtattgaacaaagggaaaacaatcttccgtttc
aatgccgcacctgctttatatatgctttctcctttcagtcctctaagaagaatatctatt
aagattttagtacactccttattcagcatgctcatcatgtgcactattctgacaaactgc
atatttatgaccttgtataacccaccggagtggaccaaaattgtcgagtacacttttact
ggaatatatacttttgaatcacttgtaaaaatccttgcaagaggcttctgtgtaggagaa
ttcacttttcttcgtgacccgtggaactggctagattttgtcgtcattgtttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtattgaga
gctttgaaaactatttctgtaatcccaggcctgaagaccattgtgggagctttgatccag
tcagtgaagaagctttctgatgtcatgatcctgactgtgttctgtctgagtgtgtttgca
ctaattggactacagctgttcatgggcaacctgaaacataaatgttttcgggattcactt
gaaaataatgaaacattagaaagcataatggataccctagaggatgaagaagactttaga
aaatacttttattacctggagggatccaaagatgctctcctttgtggtttcagcacagat
tcaggtcagtgtccagaagggtacacctgtgtgaaagctggcagaaaccctgattatggc
tacacgagctttgacactttcagctgggccttcttagccttgtttaggctaatgacccaa
gattactgggaaaacctttaccaacaaactctgcgtgctgctggcaaaacctacatgatc
ttctttgtcgtagtgattttcctgggctccttttatctaataaacttgatcctggctgtg
gttgccatggcttatgaagaacagaaccaggcaaacattgaagaagctaaacagaaagaa
ttagaatttcaacagatgttagaccgacttaaaaaagagcaagaagaagctgaggcaatt
gcagcagcagcagctgaatatacaagtattgggagaagcagaattatgggcctctcagag
agttcctctgaaacatccaaactgagctctaaaagtgctaaagaaagaagaaacagaaga
aagaaaaagaaccaaaagaagctctccagtggagaagagaagggagatgttgagaaattg
tccaaatcagaatcagaggagagcatcagaagaaaaagtttccaccttggtgtcgaaggg
cataggcgagcacgggaaaagagattatctacccccaatcagtcaccactcagcattcgt
ggctccttgttttctgcaaggcggagcagcagaacaagcctttttagtttcaagggccga
ggaagagacataggatctgagactgagtttgccgatgatgagcacagcatttttggagac
aatgagagcagaaggggctcactgttcgtgccccacagaccccctgagagacgcagcagt
aacatcagtcaagccagtaggtcctccccaatgctgccggtgaatgggaagatgcacagt
gctgtggactgcaatggtgtggtctccctggttgatggacgcacagccctcatgctcccc
aatggacagcttctgccagaggtgataatagataaggcaacttctgatgacagcggtaca
accaatcgaatacacaaaaaaaggcgttgtagttcttatctcctttcagaggatatgctg
aatgatcccaatctcagacagagagcaatgagtagagcaagcatattaacaaacactgta
gaagaacttgaagaatccagacaaaaatgtccaccttggtggtacaggtttgcacacaaa
ttcttgatctggaattgctctccacattggataaaattcaaaaagtgtgtctattttatt
gtaatggatccttttgtagatcttgcgattaccatttgcatagttttaaacacattattt
atggctatggaacaccatccaatgactgaggaattcaaaaatgtacttactataggaaac
ttggtctttactggaatctttgcagctgaaatggtattaaaactaattgccatggatcca
tatgagtatttccaagtaggctggaatatttttgacagccttattgtgactttaagttta
gtggagctctttctagcagatgtggaaggattatcagttctacgatcattcagactgctt
cgagtcttcaagttggcaaaatcctggccaacattgaacatgctgattaagatcattggt
aactccgtaggggctctaggaaacctcaccttggtgttggccatcatcgttttcattttt
gctgtggtcggcatgcagctctttggtaagagctacaaagaatgtgtctgcaagatcaat
gatgactgtacgctcccacggtggcacatgaatgacttcttccactccttcctgattgtg
ttccgcgtgctgtgtggggagtggatagagaccatgtgggactgtatggaggtcgctggt
caagccatgtgccttattgtttacatgatggtcatggtcattggaaacctggtggtccta
aacctatttctggctttattattgagctcatttagttcagacaatcttacagcaattgaa
gaagaccccgatgcaaacaacctccagattgcagtatccagaattaaaaagggaataaat
tatgtaaaacaaaccttacgtgaatttcttctaaaagcattttccaaaaagccaaagatt
tccagggagataagacaatcagaagatctgaatactaagaaggaaaactatatttctaac
catacactcgctgaaatgagcaaaggtcacaaattcctcaaggaaaaagacaaaatcggt
cattttggaagcagtgtggacaaatacttgatggaagaaagtgatggtcagtcatttatt
cataaccccagcctcacagtgacagtaccaattgcacctggggaatctgatttggaaaat
atgaatactgaggaacttagcagtgattcagatagtgaatacagcaaagggagattaaac
caatcaagctcctcagagtgcagcacagttgataaccctttgcctggagaaggagaagaa
gcagaggctgaacctgtgaattccgatgagccagaggcctgttttacagatggttgtgta
cgaaggttctcatgctgtcaagttaacatagagtcagggaaaggaaaaatctggtggaac
atcaggaaaacctgctacaagattgttgaacacagttggtttgaaagcttcattgtcctc
atgatcctgctcagcagtggtgctctggcttttgaagatatatatattgaaaggaaaaag
accattaagattatcctggagtatgcagacaagatcttcacttatgttttcattctggaa
atgcttctaaaatgggtagcatatggttataaaacatatttcaccaatgcctggtgttgg
ctggattttctaattgttgatgtttctttggttactttagtggcaaacactcttggctac
tcagatcttggccccattaaatcccttcggaccctgagagctttaagacctctaagagcc
ttatctagatttgaaggaatgagggtggttgtgaatgcactcataggagcaattccttcc
atcatgaatgtgctacttgtgtgtcttatattctggctgatattcagcatcatgggagta
aatttgtttgctggcaagttctatgagtgtattaacaccacagatgggtcacggtttcct
gcaagtcaagttccaaatcgttccgaatgttttgcccttatgaatgttagtcagaatgtg
cgatggaaaaacctgaaagtgaactttgataatgtcggacttggttatctatctctgctt
caagtcgcaacgtttaagggatggacaattattatgtatgcagcagtggattccgttaat
gtagacaagcagcccgaatacgaatacagcctctacatgtatatttattttgtcatcttt
atcatctttgggtcattcttcactttgaacttgttcattggtgtcatcatagataacttc
aaccaacagaaaaagaagcttggaggtcaagacatctttatgacagaagaacagaagaaa
tactataatgcgatgaaaaagttggggtcgaagaagccacaaaagccaattcctcgacca
gggaacaaattccaaggatgtatatttgacctagtgacaaatcaagcgtttgatatctct
atcatggttcttatctgtcttaacatggtaacaatgatggtagaaaaggaagatcaaagt
aaatatatgactggtgttttaaattggataaatttggttttcataatccttttcactgga
gaatgtgcactaaaactgatttccctcagacactactacttcactgtaggatggaatatt
tttgattttgtggttgtgattatctccatcgtaggtatgtttctagccgatatgattgaa
aaatattttgtgtcccctaccctgttccgagtgatccgtcttgcccggattggccgaatt
ctacgtctgatcaaaggagcaaaagggatccgcacgctgctctttgctttgatgatgtcc
cttcccgcgttgtttaacatcggcctcctgctcttcctggtcatgttcatctacgccatc
tttggaatgtctaactttgcctatgttaaaaaggaagatggaattaatgacatgttcaat
tttgagacctttggcaacagtatgatttgtcttttccaaattacaacctctgctggctgg
gatggattgctagcacctattcttaacagtaaaccacctgactgtgaccccaaaaaagtt
catcctggaagttcagttgaaggagactgtggtaacccatctgttggaatattctacttt
gtcagttacatcatcatatctttcctggttgtggtgaacatgtacattgcagtcatactg
gaaaattttagtgttgccactgaagaaagtactgaacctctgagtgaggatgactttgaa
atgttctatgaagtttgggaaaagtttgatccagatgcaactcagtttatagaatacagc
aagctctctgattttgcagccgccctggatcctcctcttctcatagcaaaacccaacaaa
gtccagctcattgccatggatctgcccatggtcagtggtgaccggatccactgccttgac
atcttatttgcttttacaaagcgtgttctgggtgagagtggagaaatggattctcttcgt
tcacagatggaagaaaggttcatgtctgcaaatccttccaaaatgtcctatgaacccatt
acaaccacactaaaacggaaacaagaggatgtgtcagctactgtcattcagcgtgcttat
agacgttaccgattaaggcaaaatgtcaaaaatatatcaagtatatacataaaagatgga
gacagagatgatgatttactcaataaaaaagttacgggttttgataatgttattgagaac
tcaagtccagaaaaaacagatgccacttcatccaccacctctccaccttcatatgatagt
gtaacaaagccagacaaagagaaatatgaacaagacagaacagaaaaggaagacaaaggg
aaagacagcaaggaaagcaaaaaatag
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integrated database retrieval system
