Cryptomeria japonica (Japanese cedar): 131026808
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Entry
131026808 CDS
T10556
Name
(RefSeq) uncharacterized protein LOC131026808 isoform X1
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
131026808
03430 Mismatch repair
131026808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131026808
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131026808
DNA repair and recombination proteins [BR:
cjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
131026808
MMR (mismatch excision repair)
Other MMR factors
131026808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
AAA_11
AAA_22
RhoGEF
GpA_ATPase
Motif
Other DBs
NCBI-GeneID:
131026808
NCBI-ProteinID:
XP_057812768
LinkDB
All DBs
Position
1:121797278..122054625
Genome browser
AA seq
823 aa
AA seq
DB search
MALSLRQGRFCAPKFDRNLVCQMLQWKCKYESKKFARDKFSGGDLGYFLSRALTTINLEK
AIVKPRVSTAQSVAVLESKDVKREMGSCGLNEEQASVVETNDKYVRVVAGPGSGKTRVLT
HRIAYMVTCCNVSPSSVLCITFTNKAARELFERLNNLLDKNVSRKLTVGTIHSLCAKILR
SEQVSDYHIDNDYIICDENDSEKVVKRILREVVGCLDANKASNGNKPLNADANLEGISGQ
NMDEIVMQSSESELWKDLARCKFFTRNASERLELLQFLERYDTGKSEKRKSVPAGAVKGL
LHIISKARLYNMQTFLARKHQRSVPDLPYGLYGFGLKMAEIYELELRRSNAVDFDDLLYI
AARLLHNNKHIRKEYRIKWRHILVDEFQDIDEIQYELINLLSVGNQSLFVVGDIDQAIYA
WRGANAAHMQYTLERDFPNITTFKLMRNYRSSRNILKVASVMLKNISYNRQVGSTKALNL
LPVKPAGEPICVEEFSNAVEEADFVAVQINKLVHKKLAKLSSCVILYRTHAQSFLFQSSL
TSKQIPHAVIGSVPFYSHKEVRYILAYLRFIGNCEDQMALESIINVPTRGIGEQTLAALK
RWASDRNLTLSSALKFIRTDGINRKELKIRTNARTALLQFWELIEGFQNLIHTETIGTII
EAIIERTDFKTYLKNSDNMKDASKKQLDRLSILQTIGDSATQRHGIGKMALATFLQEISL
ASDQENIMSNKDGNCVKLMTLHAAKGLEFDSVFITGLQDGLLPLQDANIDEERRLFYVGI
TRAIKQLYITFSRSTFRQGKTVEAKPSKFIMEILKSPELTEVQ
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcccttcgccagggacgtttctgtgcaccaaaatttgataggaatttagtc
tgccaaatgttgcagtggaaatgcaaatacgagtccaagaagtttgcaagggacaaattt
agtggaggagatttagggtattttttgagcagagcactaacgacgataaacttagagaag
gctatagtgaagcctagggtttcaacagctcagtcggttgccgtgcttgaaagtaaggat
gttaaaagggaaatgggaagttgcggtttaaatgaagagcaggcgagcgtggtggaaacg
aatgacaagtatgtgagggttgtggcgggccccggttctggtaaaacaagagtgttgact
catcgcattgcttatatggttacatgctgcaatgtgtcgccatccagcgtactgtgcata
acattcacaaacaaggcagctcgagagctttttgagaggctgaacaacttgctagacaaa
aatgtttcacgcaagcttacggtagggacaatacatagtttatgtgcaaagattttgagg
tctgaacaagtttctgattatcacatagataatgactacataatctgtgatgagaatgac
tcagaaaaggttgtgaaaaggattcttcgagaggtggtgggttgtttggatgcaaacaag
gcatccaatggaaacaaacctttgaatgcagatgcaaatttggaagggatatctggtcaa
aatatggatgaaatagttatgcaaagctctgagagtgaactttggaaggatttggctcga
tgcaagtttttcacaagaaatgcatctgagagattagaattattgcagttcctggaaagg
tatgatacagggaagtctgagaaaaggaagtcagttcctgcaggtgctgtcaaagggctg
ctacacattataagcaaggctagactgtacaacatgcaaacgtttttagcaagaaaacat
caaagaagcgtacctgatctcccttatggactttatgggtttggtttgaagatggctgaa
atttatgagcttgaacttaggagatccaatgctgtagactttgatgacctgttgtacatt
gcagctcgcctgttgcacaataataaacacatacgaaaggaatatcgaataaaatggaga
catatacttgtggatgagttccaagatattgatgaaatacagtatgagctgattaatctt
ttgtcagttggaaaccaaagcctttttgttgttggtgatatagatcaggctatatatgca
tggcgtggagcaaatgcggctcatatgcagtatacactagaacgagactttcctaacatc
accactttcaagcttatgaggaattatcgttcgtcaaggaacattttaaaggttgcttct
gtgatgttgaaaaatatttcctataaccggcaagttggatccacaaaggcactaaatctt
ctcccagtgaaaccagcaggggaacctatttgtgttgaggagttttccaatgctgttgaa
gaagcagattttgttgcagttcagataaataaacttgtccataaaaaattagccaaacta
agcagctgtgtgatattatatcgtacccatgctcagtcatttttgtttcaatcctctctt
acaagcaagcaaattcctcatgcagttattgggtctgtaccattctactctcacaaggag
gtacgttatatccttgcatatctacgtttcatagggaattgtgaagatcagatggcctta
gagagtattattaatgtgcctacaagaggcattggagaacagacattggctgcactcaag
cgttgggcatctgatagaaatttgacactttcaagtgctttgaaatttattcgtactgat
ggtatcaaccgtaaggagttgaaaattagaactaatgcaagaactgcattgctgcaattc
tgggaactgattgaagggtttcagaacctaattcatactgagacaatcggaacgattata
gaagctattattgaaaggactgattttaaaacctatttaaagaattcagacaatatgaag
gatgcatctaagaaacaattggaccgactttctattttgcagacaattggagattcagca
acccaaaggcatggaattgggaagatggcccttgcaacatttcttcaggaaatttctctt
gcatctgaccaagagaacataatgagtaataaagatggcaactgtgtaaagctgatgact
ctgcatgctgccaaaggcctagaatttgactcggtgttcatcactggattgcaagatggt
ttgcttccattacaagatgctaatattgatgaggagcgtcgacttttctatgtaggaata
accagggcaataaaacaactgtacataaccttttcaagatcaacgtttagacaaggaaag
acagttgaagcaaagccatcaaaatttattatggagatactgaagtcacctgaattaaca
gaggttcagtag
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