Cryptomeria japonica (Japanese cedar): 131027070
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Entry
131027070 CDS
T10556
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131027070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131027070
Spliceosome [BR:
cjf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
131027070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
PRP4
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
WD_LRWD1
Beta-prop_SCAP
Beta-prop_Nup120_160
WD40_like
TFIIF_alpha
Beta-prop_NWD2_C
SHE3
Di19_C
ADH_Fe_C
Motif
Other DBs
NCBI-GeneID:
131027070
NCBI-ProteinID:
XP_057813021
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All DBs
Position
7:complement(277854830..277943587)
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AA seq
655 aa
AA seq
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MDEPSTSAGLDPSTPAISPMDITIPPAAPLISTEANSLTSAPVATVSSGIPPAAIVPPFI
PPNAIASTSIIPPPPPPPVMPLAPLPAVPAVVAPNFPSSPLDNNSFSSSISVSPQVGVPP
VAPAPVIIPRPPFVPPVPPSSSRPGAPPSFVLPARPLDSNDEQGPDSDSKDESPSSSPEH
PDDSSAADYEITEEIRKVRERQDQLVQELLMRRRAYALAVPTNDSAVRARLRRLNEPVTL
FGEREMERRDRLRTLMAKLDSEGQLEKLMKVQEEEEAAANAAAEDVQDMEGPQSYPFYTI
GSQELLKARTEIMKFSLPRAASRIQRAKRRREDPDEDEDAELNCVLEQASRIIMDCSEIG
DDRPLSGCAFSSDATMLATSAWSGVTKLWRVPEIKKVVALKGHTERVTDVAFSPRNNHLA
TSSADRTAILWNPEGGILKTFEGHLDRLARVAFHPSGLYLGTTSFDKTWRLWDLNTGIEL
LLQEGHSRSVYGIAFHCDGSLVATCGLDALARVWDLRTGRSILALEGHVKPVLGIDFSPN
GYHLATGGEDHTCRIWDIRKRRSIYVIPAHSHLISQVKFEPQEGYFLVTASYDNTAKVWS
ARDFKAIKTLSGHEAKVTSVDVTADGQYIATVSHDRTIKLWSSNNSGNGNDMTIG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaccctctacatcagcaggattggatccttctacacccgcaatcagcccaatg
gacataactatacctccagcagcaccattaatttccacagaagcaaattccctaacttca
gcaccagttgctactgtttcttcaggtattcctcctgctgcaattgttcctccatttatc
cctcccaatgctatagcatccacatcgattatacctcctcctcctcctcctcctgttatg
ccccttgcccctcttcctgcagtgcctgctgtggttgcaccaaattttccttcatctcca
cttgataataattcatttagctcatctatatctgtttccccacaggttggagttccaccc
gttgcccctgctccagttataattcccaggcccccgtttgtaccacctgttcctccgagt
tcctctcggcctggagctcctccctcctttgtgctccctgcccgccctttagacagtaat
gatgagcaaggaccagattcagacagcaaagatgaaagcccttcttcaagccccgaacat
ccagatgattcatctgcagcagactatgagattactgaggagatcagaaaggttagggag
aggcaggatcagttggttcaggaacttttgatgcgtaggcgggcttatgcattggctgtg
cctacaaatgactcagctgtccgtgctcgtcttcggcggttgaatgagcctgtaaccctg
tttggtgagagggagatggaaagacgtgatcggctcagaacgcttatggcaaagcttgat
tcagaaggtcaacttgagaagcttatgaaggttcaagaagaagaagaggcagctgcaaat
gctgctgctgaagatgttcaggacatggaagggcctcagtcttatcctttctatacgata
ggctcccaggagctattaaaagcgcgaactgaaattatgaaattttcactccctcgggca
gcctcgaggatacaaagagctaaaaggaggagagaggaccctgatgaagatgaagatgcg
gaattgaattgtgtcttagaacaggcatccaggattattatggattgtagtgaaattgga
gacgatcgacctctttcaggatgcgcattttcttcggatgcaactatgcttgcaacgagt
gcttggagtggagtcacaaaattatggagagtgccggaaataaaaaaggttgtagcttta
aaggggcacactgaacgggtaacggatgtcgccttttctcccagaaacaaccatttagca
acatcctctgctgatcgtactgcaatactttggaatcctgaaggaggtattctaaaaaca
tttgaaggccatttagaccgtcttgctcgtgtagcatttcatccatctgggttgtatttg
ggcaccactagctttgacaagacatggagattatgggaccttaacacaggaattgaattg
ctactgcaagaagggcatagccgcagtgtttatgggattgcttttcattgtgatggttca
ttagtagcaacttgtgggttggatgcattggcacgtgtttgggaccttcgtacaggaaga
agcatccttgctttggaaggccatgtgaaaccagtccttggcatagatttctcaccaaat
gggtatcacttagcaacaggtggtgaagatcatacctgtcgcatttgggacataaggaag
agacgatcaatatatgtcataccagctcattctcacctcatatcacaagtcaagtttgaa
cctcaggagggatatttcttggtaactgcttcatatgataatactgcaaaggtgtggtcc
gcacgagacttcaaggccatcaagacattgtcgggacatgaggcaaaggttacaagtgtg
gatgtaactgcagatgggcaatacattgcaacggtatctcatgatcgaacaataaaacta
tggtccagcaacaatagtggcaacggtaatgacatgactataggctga
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