Cryptomeria japonica (Japanese cedar): 131027079
Help
Entry
131027079 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131027079
03420 Nucleotide excision repair
131027079
03430 Mismatch repair
131027079
03440 Homologous recombination
131027079
03460 Fanconi anemia pathway
131027079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131027079
03032 DNA replication proteins [BR:
cjf03032
]
131027079
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131027079
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131027079
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131027079
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131027079
MMR (mismatch excision repair)
131027079
DSBR (double strand breaks repair)
HR (homologous recombination)
131027079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
zf-CCHC
tRNA_anti-codon
zf-CCHC_5
zf-CCHC_3
OB_MEIOB_N
DUF223
zf-CCHC_2
CDC24_OB3
TMEM219
Motif
Other DBs
NCBI-GeneID:
131027079
NCBI-ProteinID:
XP_057813034
LinkDB
All DBs
Position
7:complement(279437898..279445084)
Genome browser
AA seq
912 aa
AA seq
DB search
MESNLFDKPEVEVEAMEPNLTANAISVMNNGATDLQPIVQVLDIKQIGPQTSQERYRTVL
SDGTHMQQAMLATQLNQLVKSGRIQKGSVVQLTEYICNTVQSRKIIIVLGMGVVALNCDI
IGEPRPMVDANAQQQQRVSMPVQQPPQAQASPRAQPAQPYAGPYNAGSRAGPNLNPASPI
MNGIYQKSEPGTGTAGPPRMSATGSYDKPAQPYINSVQKPSNSGLGVAAGRGMIAQTNMY
GRPASTPSYQPPSMYSNRGPIARNEAPPRIIPISALNPYQGRWTIKARVTAKGDLRRFNN
AKGDGKVFSFDLLDSEGGEIRITCFNSVADQFYDRIENGRVYMVSKGSLKPAQKNFNHLN
NEWEIFLESTSTVEACLEEDNSIPQQHYNFRPISEIEHMENNSMVDIIGVVISINPSSTI
MRKNGTETQKRALQLKDMSGCSVEVTMWGAFCNKEGQQLQEMCDSGTSPILAVKAGRISD
FSGKSVGTISTSQLSVNPDFQEAHKLRDWYEKEGRNIAPQSLSKEGAGGGRVDMRKMVSQ
IKDEGLGRSEKPDWISVKATVSFIKVDNFCYTACPLMVGDRQCNKKVNNFGDGTWQCERC
NSSFPECDYRYLLQVQVQDHTGLTWVTAFQEAGEEIMGVPAKQLYMLKNEEQDDSKFGEI
IRKVLFNQFLFKLKVKEETYNDEQRVKSVVVKSERVDYSSESKVLLDLIGKLSRGEPISG
TSVATTNLGINAGYAGMGSISGGSFGGNGLDTNQGGGYYGNSGGYGGVPNGSSSPISCYK
CKRSGHFAKDCPDGSGGYSGGGLSSAYANSGGGLSSGYANSGTNTSSTSCYKCGQPGHFA
KDCPNGSGGYSGGSLSSGYANSGANTGSTSCYKCGQSGHWARECPGQAGAQATYGGVATA
SYGMRSGGYGGY
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaaatttgtttgataaacctgaagttgaagttgaagccatggagccaaatttg
acagcaaatgccatttctgtcatgaataatggagccacagatcttcagccaattgtacaa
gttttggacatcaaacaaattgggccacaaacctctcaggaacggtacagaacggttcta
tcagatgggacacatatgcagcaagcaatgcttgctacacagcttaatcaattagtcaaa
tcaggaaggattcagaaggggtctgtagttcaattgacagagtatatatgtaataccgtg
cagagtcgcaagattattatagttttgggcatgggagttgtagctcttaactgtgatata
attggtgaaccaaggccaatggtagatgcaaatgctcagcagcaacaaagagtttccatg
ccagttcaacagccaccccaggctcaagcttctccacgtgctcaacctgcacagccatat
gccggcccttacaatgcagggtcaagggcagggccaaatctgaatccagcatcaccaata
atgaatggaatttatcaaaagagtgagcctggcacagggacagcaggtccacctcgtatg
tctgctactgggtcatatgacaagcctgctcagccatacataaattcagtccaaaagcct
tcaaacagtggacttggtgtggcagctggcagaggaatgattgctcaaacaaatatgtat
ggccgcccagctagtaccccttcctatcagccgccttctatgtattcaaacagaggaccc
atagcgagaaatgaagcacctccaagaattattcctatttctgctttgaatccctatcag
ggccggtggactatcaaagcaagagtcactgccaagggagatcttcgtcgttttaataat
gcaaaaggagatgggaaagtttttagttttgatcttcttgattctgaaggaggagaaata
cgcataacatgttttaattcagttgcagatcaattttatgatcgtattgagaatggaaga
gtatacatggtttccaaggggagtctgaaaccggcacagaaaaatttcaaccacttaaac
aatgaatgggaaattttcttggagtctacatcaacagtagaggcttgtttggaagaggat
aactcgattccgcagcagcattataactttaggccaatcagtgaaattgagcacatggaa
aataattcaatggtagacattattggtgttgtcatctccattaatccttccagcactata
atgagaaaaaatggaacagagacccagaaaagagcgcttcagctaaaggacatgtcgggg
tgcagtgttgaggtaacaatgtggggggcattctgcaacaaggagggccaacaacttcaa
gaaatgtgtgattcaggaacctcccccatcctggctgttaaggctggccgaataagtgat
tttagtgggaaatctgtgggaacaatctctaccagccagctttctgtgaatccagatttt
caagaagcacacaaattgagagactggtatgagaaagagggaaggaacattgccccccag
tccttatccaaagaaggtgctggtggtggccgggttgacatgcgaaagatggtatcccag
attaaagatgagggacttggtagatccgagaaacccgattggatttcagtcaaagcaact
gtatctttcattaaggttgataatttttgctacactgcttgccctttgatggttggagac
aggcagtgcaataagaaggtgaataattttggagatggaacctggcaatgtgaaagatgc
aatagtagtttccctgaatgtgattacagatacctgcttcaagtccaagtgcaagaccac
actggattaacatgggttactgcttttcaagaagcaggggaggaaatcatgggggtccca
gctaagcaattgtacatgttaaagaatgaagaacaagatgacagcaaatttggggaaatt
attcgtaaggtcctttttaaccagtttttgtttaaactgaaagtaaaagaggagacatac
aatgatgaacagagagtgaagtcggtggttgtgaaatcagaaagagtggattattcatct
gagagtaaagttttactagatcttattggtaagctttctagaggagaacctattagtggg
acatcagtcgcaacgacaaatttgggaatcaatgcaggatatgctggcatgggaagtatt
tcaggtggcagcttcggtggcaatggactggacacgaatcaaggaggtggatactatggt
aattcaggtggttatgggggagtgccaaatgggagttcatctcctatttcatgttacaag
tgtaaaagaagtggtcattttgcaaaggattgcccggatggttctggtggttattctggg
ggtggcctcagtagtgcatatgcaaattctgggggtggcctcagtagtggatatgcaaat
tctgggacaaatacaagctctacatcatgctataaatgtggtcaacctggtcattttgca
aaggactgccctaatggttccggtggttattctgggggcagtctcagcagtgggtatgca
aattctggggcaaatacaggttctacttcatgctataaatgtggtcagtctggtcattgg
gcaagagaatgtccaggtcaagctggggcgcaagcaacttatggtggagttgcaacagcc
agctatggcatgagaagtggtgggtatggtggttattga
DBGET
integrated database retrieval system
