Cryptomeria japonica (Japanese cedar): 131027240
Help
Entry
131027240 CDS
T10556
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03015
mRNA surveillance pathway
cjf04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131027240
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
131027240
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cjf01009
]
131027240
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131027240
03036 Chromosome and associated proteins [BR:
cjf03036
]
131027240
Protein phosphatases and associated proteins [BR:
cjf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
131027240
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
131027240
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
131027240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
DSE1_N
Beta-prop_WDR36-Utp21_1st
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
131027240
NCBI-ProteinID:
XP_057813232
LinkDB
All DBs
Position
4:complement(226754610..226830180)
Genome browser
AA seq
508 aa
AA seq
DB search
MISGEEGGTSLEWKFSQVFGERAAGEDVQEVDIISAIEFDQTGEHLATGDRGGRVVLFER
TDGKDLQSQSELERLDYPMPKHPEYRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCPTVN
GALFLLSTNDKTIKLWKVQERKIRKVCEMNAEPITRLENGSLPGTSPVVIPRTVSPSNGI
PSQFFSNASSDSFPVGGIPSLRLPTVVAGSETSLVARCRRIYGHAHDYHINSISNNSDGE
TYISADDLRINLWNLEISDQCFNIVDIKPTNMEELTEVITSAEFHPSHCNMLAYSSSKGT
IRLIDMRQSALCDRYSKVFEEQETPGSRSFFTEIIASVSDIKFAKDGRHILSRDFMTLKL
WDLNMESSPVATFKVHEYLRPKLCDLYENDSIFDKFECCLGGNGLHMATGSYSNAFRIFN
RFGGSDEGTILEASKNPNRRRLIPTPPKPGRSLASLTRGRTARVNDSAGGEINGGAYDST
SKLLHLAWHPTTNVIACAASNSLYMYYA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgggcgaggaaggaggaacttccttggagtggaagttctcgcaggtttttggt
gaacgggcggccggagaagacgtgcaagaggttgatattatctcggcaattgagtttgac
cagactggtgagcatttggctacgggagatcgtggtgggcgtgttgtactttttgaaagg
actgatggcaaagatctgcaatctcagagtgagcttgaaaggctagattaccccatgcct
aagcatcctgaatatagatacaagactgaatttcagagccatgaacctgagtttgactat
ttgaagagtttggaaatagaagagaaaatcaataagatcaggtggtgcccaactgtcaat
ggtgctttgtttcttctttcgacaaatgacaaaacaatcaagctatggaaggttcaagag
agaaagatcaggaaagtatgtgaaatgaatgcagaacctataactcggttggaaaatgga
agcttgccaggaactagtcctgtggtaattccaaggacagtttccccctcaaatggcatt
ccttctcagtttttcagtaatgcatcttcagactcatttccagtaggaggcattccttca
ctccgactacccacggtagtagctggcagcgaaacttcactcgtggccagatgtcggaga
atatatggtcatgctcatgattatcacatcaactcaatttcaaacaacagtgatggggaa
acatacatatcagcagatgatctacgcataaatttgtggaacttggaaataagtgatcaa
tgcttcaatattgttgatattaaacctaccaacatggaagagcttactgaggtgataaca
tcggcagaatttcaccctagtcactgcaatatgttagcttacagtagttcaaagggcact
attcgacttattgacatgcgacaatcggctttatgtgacagatattcaaaagtatttgag
gagcaggaaacacctggttcaagatcattttttaccgagataattgcttctgtttctgat
ataaagtttgctaaggatggcagacatattttgagtcgtgatttcatgaccctaaagctg
tgggacttaaacatggaatcaagtccagttgcgactttcaaggttcatgaatatctaagg
cctaagttatgtgatttgtatgaaaatgattcgatatttgataagtttgagtgctgcctt
ggtggtaatggacttcatatggcaactgggtcttacagcaatgcattccgtattttcaat
cgttttggtggtagtgatgagggaaccatcttggaagccagtaaaaatcccaacagaaga
cggctcattccaacacctccaaagcctggaaggtcccttgcaagtcttacacgggggcga
actgcgcgagtaaatgacagcgcagggggggaaataaatggaggggcatatgattccact
tcaaagttactccatttggcatggcatccaaccacaaatgtcattgcatgtgctgcttca
aatagtttatatatgtattatgcctaa
DBGET
integrated database retrieval system
