KEGG   Cryptomeria japonica (Japanese cedar): 131027458
Entry
131027458         CDS       T10556                                 
Name
(RefSeq) uncharacterized protein LOC131027458
  KO
K10842  CDK-activating kinase assembly factor MAT1
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03022  Basal transcription factors
cjf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    131027458
  09124 Replication and repair
   03420 Nucleotide excision repair
    131027458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjf03021]
    131027458
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131027458
Transcription machinery [BR:cjf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     131027458
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     131027458
SSDB
Motif
Pfam: MAT1 DUF1720 PLU-1 DUF5721
Other DBs
NCBI-GeneID: 131027458
NCBI-ProteinID: XP_057813518
LinkDB
Position
4:complement(735317663..735351403)
AA seq 186 aa
MVVASASNLFSKEVSIRRRIANIYNKREEDFLSLREYNDYLEEVEDMTFKLVEGTDVPAI
EDKIAKYQEENAEQIINSRAQRAEEVARSLREHQEQATASGPNDLGLPQPSQATGVGQYN
PMFMQPRPTGAGVQPVPIGGNNAHGMPEDEATQRQRAERAARAGGWSFEICRKRAFEEAF
SSLWIS
NT seq 561 nt   +upstreamnt  +downstreamnt
atggtggtggcttctgcaagcaatttatttagtaaagaagtctcaattcgaaggagaatc
gctaatatatataataagagagaagaagacttcctatcactaagagagtataatgactat
ctggaggaggttgaggacatgacatttaaattggtggagggaacagatgtcccggccatt
gaagataagattgcaaagtatcaggaagaaaatgctgaacagataataaattctcgagcc
caaagggccgaagaagtggcaagatctctgagggaacatcaagaacaagctacagctagt
ggtccaaatgacttgggtctaccacaaccttctcaggcaactggagttggacagtataat
ccaatgtttatgcagccaaggccaacgggagctggagtacaaccagtacctataggtggc
aataatgcacatggcatgccagaggatgaagcaactcaaagacaacgggctgaaagagcg
gcaagagcaggagggtggagttttgaaatatgtagaaagagggcatttgaagaagctttc
agtagcttatggatttcctaa

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