Cryptomeria japonica (Japanese cedar): 131027596
Help
Entry
131027596 CDS
T10556
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013
Nucleocytoplasmic transport
cjf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131027596
03015 mRNA surveillance pathway
131027596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131027596
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131027596
mRNA cycle factors
P-body specific factors
131027596
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
131027596
NCBI-ProteinID:
XP_057813648
LinkDB
All DBs
Position
8
Genome browser
AA seq
1182 aa
AA seq
DB search
MESSAHKESNDRLEESKRLVEAKCALRRSNLTPERPDSGFLRTLDSSIKRNTAVIKKLKQ
INEEQREGLLEELKSVNVSKFVSEAVTAICDAKLRSSDINAAVQVCSLLHQRYKDFSPTL
IQGLLKVFFPGKAIEDADVDRSLRAMKKRSTLKLLMELYFVGVIEDSSFFINIIKDLTST
EHFKDRDTTQMHLSLLVSFVRQGRAFLGLPLSGQDLHDEIYKELNVTMEQKKFLRKALQS
FYDASVELLQSEHSSLRQMEQENAKMLNAKGELSEENAIAYEKLRKSYELLFRSVSALAE
ALDIKPPVMPEDGHTTRVTTGEDGSSVATTKDASNPEPVWDDEETKAFYESLPDLRAFVP
AVLLGEAEPNKTNEQSHKTPEQQQEILFESEQGHLSVPETADLIQDIETSKGEGASDDKS
REKEDKERGKETEKDKWKERDTDKKGEKENEKDKVKSLDGPNLDTLLQRLPGCVSRDLID
QLTVDFCYLNSKSNRKKLVRALFNVPRTSLVLLPYYSRMVATLSTCMKDVASMILQLLEE
EFNFLINKKDQMNIETKIRNIRFIGELAKFKVAAASLVFSCLKACLDDFTHHNIDVSCNL
LETCGRFLYRSPETTIRMANMLEIMMRLKNVKNLDARHSTLVENAYYLCKPPERSARVSK
VRPPLHQYVRKLLFSDLDKQSIEHVCRQLRKLPWSECEPYVLKCFMKVYKGKYGQVHLIA
SLTAGLSRYQEAFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYRLIDSSV
IFDTLYLVLFFGHHTAEQDELDPSEDCFRIRMVITALQTCGHFFDKGSSKRRLDKFLLYF
QRYILSKGGIPLDVEFDLQDLFAELRPKMIRYSSLEEADAVITELEEQEWNGAPEKTGGE
RHSDTEGGKTALNSARVAVNGQMAMNGTEENGMGIDDGESGIETESSSLEPDGHEDEEES
DEDKSADHDDELDDENEEDDGGEHVPSEEEDVQVRQKKLMEVDPEEEADFERELRAVMQE
SLDSRKLEIRARTTLNMAIPMNLGEGSREHNRASEVESGDENLDEESGGTNVSFKVLVKK
GNKQQIKQLYIPHDCSLVQSTKQKEAAELEEKQDIKRLVLEYNEREEEDSSGATAQPINW
PPVGLGAANKGYGGQGGWDGSGRSGSARQRHHLQGSGYIRRR
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggagtcatccgctcacaaggaatccaatgatcgtcttgaggaatcaaaaaggttagtt
gaagcaaagtgtgcactgcgtcgttctaatttgactccagaaaggccagattcaggattt
ctaaggactcttgattctagcatcaagcgtaatacagcagtcataaaaaaactaaaacag
ataaatgaagagcagcgagaaggacttttggaagaacttaaatcagtgaacgtgagcaaa
tttgtgagcgaagccgtaacagccatttgtgatgcaaaacttagaagttcagacatcaat
gcagctgtgcaggtctgctcattgctgcatcagaggtataaggatttttcacccactttg
attcaagggctcttaaaagtcttctttcctggtaaagctattgaagatgctgatgtagac
cggagcttaagagcaatgaagaagcgaagcacactaaagcttcttatggagctatatttt
gtaggagttatagaggattctagttttttcataaatatcataaaagaccttactagcaca
gagcattttaaggatagggacactactcaaatgcatctatcattgcttgtcagtttcgtt
cgtcaagggagggcctttctaggtctccctctttcaggccaagatttacatgatgagatt
tataaggagctaaatgttactatggaacaaaagaagtttctcaggaaggcattgcagtca
ttctatgatgcatctgtggagcttcttcaatcagagcattcttcccttagacagatggaa
caagagaatgcaaaaatgttgaatgcaaagggagagctaagtgaagaaaatgcgattgca
tatgaaaaactgagaaaatcgtatgaactcttgttccggagtgtttcagctttggcggaa
gcactggacataaagcctcctgtgatgccagaggatggccacactactagggttaccact
ggtgaagatggatcttcagttgcaactacaaaggatgcttccaatcctgaacctgtttgg
gatgatgaagagactaaggcattctatgaaagcttaccagatcttagggcatttgtccct
gcagtgttgctgggagaagcagaacctaataagactaatgagcaatcgcacaagactcct
gaacaacagcaggaaatactatttgaatcagagcaaggtcatttgtctgttccagaaact
gcagatttgattcaagacattgaaacctcaaaaggagagggggcatctgatgataagtcc
agagaaaaagaagataaggaaaggggcaaagagacagaaaaggacaagtggaaggagaga
gacactgataagaaaggagaaaaagaaaatgaaaaggataaagtcaagagtcttgatggt
ccaaatttagatactctgttgcaacgacttccaggttgtgtcagtcgtgatcttattgac
cagttgacggtagacttttgttatctcaattcaaaaagtaatcggaaaaaacttgtccga
gcattgttcaatgtccctcggacatcattagtactgttgccatactattcaagaatggtg
gcaacattgtcaacatgcatgaaagatgtagcttcaatgattttgcagctgctagaagaa
gagtttaacttcttaataaataagaaggatcaaatgaatattgaaacaaagattagaaat
ataaggttcattggggagttggcaaagttcaaagttgctgcagcaagtcttgtatttagc
tgtttgaaggcctgtttggatgacttcacacatcataacatagatgtttcttgcaacttg
cttgaaacatgtggccgttttttgtatcgctcaccagaaacaacaatacgaatggcaaac
atgctggaaataatgatgcgtttgaaaaatgtcaaaaatcttgatgcccgtcacagtaca
ttggttgagaatgcttactatctttgtaaaccacctgaaagatctgcaagagtttctaaa
gttagacctcctttgcatcagtatgttcggaaactgctattttcagacttggataaacaa
tccatagagcatgtctgtcgtcagcttcgtaaactaccgtggagtgaatgtgaaccatat
gttctaaagtgttttatgaaggtttacaagggaaaatatggtcaagtacaccttattgca
tctcttactgcgggcttaagtcgttatcaagaagcatttgctgttgctgttgtggatgag
gttctagaggagatcaggcttggactggagttgaatgattatggaatgcagcagcggcgc
atagcacatatgcgcttcttgggagagctatacaattatcgtcttattgattcatctgtg
atctttgatacactttatttggtccttttctttggacatcatactgcagagcaagatgaa
ctagatccatcagaggattgtttccgcattcggatggtcataactgcactccagacatgt
ggccacttttttgacaaaggttcttctaaaaggaggcttgacaagtttctgttatatttt
caaagatatattctcagcaaggggggcatacctctggatgttgagtttgatctccaggat
ctatttgctgagttacgaccaaaaatgattagatattcatccttggaggaagcagatgct
gttataactgagttagaagaacaggaatggaatggagctcctgaaaagacaggaggtgaa
agacattctgatactgaaggaggaaagacagctctaaattctgcacgtgttgcggtcaat
ggtcaaatggcaatgaatggaacagaggagaatggcatggggattgatgatggagaaagt
ggaattgaaacagaaagtagtagcttggaaccagatggtcatgaagatgaggaggaatca
gatgaagacaagtctgctgatcatgatgatgaacttgatgatgaaaatgaagaagatgat
ggtggggaacatgttccttctgaagaagaagatgtgcaagtaagacagaagaaactgatg
gaggttgatccagaagaggaagcagattttgaacgtgagctgagggcagttatgcaggag
agtttagattctcgtaaactagaaatacgggcacgtactacactgaacatggcaattcct
atgaatcttggtgaaggatccagagaacacaacagggcaagtgaggtagaaagtggcgat
gagaatttagatgaagagagtggtgggactaatgtttcttttaaagttcttgtaaaaaag
ggtaataagcagcaaatcaagcaattgtacattccacatgattgctctcttgtgcaaagt
acaaagcagaaggaagcagctgaacttgaagagaagcaggacatcaaaagactggtttta
gaatacaatgaacgggaggaagaggattcatctggtgctacagcacagccaattaattgg
cctccagtaggtttaggtgcagcaaataaaggatatggtggccaaggaggatgggatggt
tctgggaggtcaggaagtgcacgtcagaggcaccatctacaaggttcgggctatattcga
cgcagatag
DBGET
integrated database retrieval system
