Cryptomeria japonica (Japanese cedar): 131028205
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Entry
131028205 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131028205
03420 Nucleotide excision repair
131028205
03430 Mismatch repair
131028205
03440 Homologous recombination
131028205
03460 Fanconi anemia pathway
131028205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131028205
03032 DNA replication proteins [BR:
cjf03032
]
131028205
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131028205
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131028205
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131028205
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131028205
MMR (mismatch excision repair)
131028205
DSBR (double strand breaks repair)
HR (homologous recombination)
131028205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
Rep-A_N
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
131028205
NCBI-ProteinID:
XP_057814435
LinkDB
All DBs
Position
1:15744488..15752741
Genome browser
AA seq
654 aa
AA seq
DB search
MAGDPDDNDRYKIVLSNGTYMQLAILPPKYADLLHAETLKIGSLLLLTNYACRYVWNTRT
IIIFTLDVKKTNCDLVGKPRYLFKEQEEQMLGRETPPSTKRSLKFGVDLPSPQYAPSENI
SPIKSLNTFQNNWTIKGRVTNKRKMHKYNMAKHNGQVFSFDIIDEEGCEIRITSFDEIAN
LHYHRVEKGTSYAVSKGSVKDANTVYNKLNNHLEIILTETSVLKRCAPDSVEPGKKTHFT
PIDEVLTNTNNTLVDVIGVVVNVGEIPVIHRKDGSIVNKRIVKINDMSTLTIDVNLWGPP
SKQLGNDLKNMHASGIFVILAVQNTRVGYFNGKVIYISASTTFEINPSIPEADPLRLRGP
IQQCLDSHSLDVHAKNNQYQRMSIASILQRLSIVPETIETTITAVLRFIKGDQFYYTACP
LQFKGKECKNKCSKLVENLWLCPRCQTQFPECNYKYLLQMKLQDQTGIVWASAFDEVGTE
LLALSAKELYMLQYELTTKKTPRSILNEAMFNYYSFTILVSTDTYNFERRIKVTIKKVQL
LACRDCPNGFNVMDALSYKIQHDRYYSDVIIDVATAKLLPLTTTDVSDFLHTLPNFIDPQ
PPLPTQDPLYNVDEVELQPTSSFIPKLSCSTAELDAIKKMLHLDKDDQNVAAWP
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgatccagacgataatgacagatacaaaatagtcttgtctaatggcacgtat
atgcagttggccattttgccacctaagtatgctgacttattacatgcggagacgttgaag
ataggttctctccttttgttgacaaactatgcttgtcgatatgtttggaacacaaggacc
atcattatattcactctagatgtcaaaaaaacgaattgtgatttggttggaaaacccaga
tacctctttaaagaacaggaagaacaaatgttgggccgagaaaccccgccatccactaaa
cgttctcttaaattcggtgtagatctgccttctccacaatatgctccctctgaaaatatc
agccctattaaaagcttgaacactttccaaaacaattggacaataaaaggtcgagtcaca
aataagaggaaaatgcataaatataatatggcaaaacacaatggccaagtttttagtttt
gatattatagacgaagagggttgtgaaattagaattacttcctttgatgaaatagcaaac
ttgcactatcatcgagttgaaaaaggaacttcatatgctgtttccaaaggttctgtaaaa
gatgcaaacacagtatacaataagcttaacaaccaccttgagattatcttgactgaaact
tcagttttgaagcggtgtgcccctgattctgttgagccagggaaaaaaacccacttcacc
cctattgatgaagttctcaccaacaccaacaatactttggttgatgttattggtgttgtt
gtcaatgtcggagagattcctgtaattcatagaaaggatggatctattgtaaacaagaga
atagtaaaaataaatgatatgtcaactttgacaattgatgttaacctttgggggccgcca
tcaaaacaactaggcaatgacttgaagaatatgcatgcatctggaatatttgtcatcctt
gctgttcaaaatacaagggttgggtatttcaatggaaaagttatttatatttcagcgtca
acaactttcgaaattaacccttccattcctgaagcagaccccctccgtttaagaggccct
atccaacaatgccttgattcacactctttggatgtgcatgccaaaaataaccagtaccag
agaatgtccattgcatccatccttcaacgtcttagcattgtgccagaaaccattgagact
actattacagctgtcctgcgattcataaagggggaccaattttattatacagcttgccca
ttacaattcaaaggtaaagaatgtaaaaataaatgtagtaaactagttgagaatttgtgg
ctttgccctaggtgtcaaacacaattccctgaatgtaattacaaatacctcctacagatg
aagctacaagatcaaacaggcattgtttgggctagtgcatttgatgaggttggtacagaa
ctcttggctctatctgcaaaggaattatacatgttgcaatatgaattaacaacaaaaaaa
acacctcgtagcatacttaatgaagctatgttcaactactatagttttacaattttggtg
tctactgacacatacaactttgagcgtagaataaaagtaacaatcaagaaagtgcagcta
cttgcttgcagagattgcccgaatgggttcaatgttatggacgcattgagttacaaaatt
caacatgaccgttactacagtgatgttatcattgacgttgcaactgctaaattattgccg
ctgacaactaccgatgtatctgattttttgcataccctcccaaatttcattgatcctcag
cctcctttgccaacacaagacccactctacaatgttgatgaagttgaattgcaacccaca
tcatcattcattccaaagttgtcgtgttcaaccgctgaactagatgccattaaaaagatg
ttgcacctagataaggatgatcaaaatgttgcagcttggccttaa
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