Cryptomeria japonica (Japanese cedar): 131028240
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Entry
131028240 CDS
T10556
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf00040
Pentose and glucuronate interconversions
cjf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
131028240
Enzymes [BR:
cjf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
131028240
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
131028240
NCBI-ProteinID:
XP_057814469
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Position
7:139350437..139353038
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AA seq
420 aa
AA seq
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MGFQILATWVLFFWVLCNHGQISGAAVFENFAGLHNNSFPVEEDPNSVAQMVHEKINSTR
RDLAGLSCRTGNPIDDCWRCDPNWRRNRKRLADCAIGFGRNAIGGKYGRFYVVTDPGDYN
PVNPRPGTLRHAVIQTEPLWIIFKGNMNIRLKQELIMNSFKTIDGRGVNVHIALGPCITI
QYVTNIIIHGVHIHDCRPAGNALVRSSPTHFGWRTMCDGDGVSIFGSSHIWVDHCSLSRC
ADGLIDAIMGSTAITISNNHFAHHNEVMLLGHSDAYTADVNMQVTIAFNHFGKGLIQRMP
RCRHGYFHVVNNEYTQWQMYAIGGSANPTIISQGNRFVASDNPFAKEVTKRENFNPGVWQ
QWNWRSEGDLMLNGAFFTPSGTGASSTYPEALSLMARPPSLVKTLTKTAGPLSCRGRATC
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgggttttcaaattttggcgacatgggtactgttcttctgggtactctgcaaccatgga
cagattagcggagcagctgtgtttgagaatttcgcaggattgcacaacaattccttccct
gtggaagaagaccccaacagtgtagctcagatggttcacgagaaaattaacagtaccagg
cgagatctggctggtttgtcatgcaggacggggaaccccatcgatgattgctggagatgt
gacccaaactggcggcgtaaccgcaagcggctagcagactgcgccattggcttcggcagg
aacgccattggaggcaagtatggccgcttttacgttgtaacagatcctggtgactataac
ccggttaatcctcgccctggcactctgcgccacgcagtcatccagacggagcctctgtgg
atcattttcaagggaaacatgaacatccggctcaagcaggagctcataatgaacagtttc
aaaacaattgacggtcgtggcgtcaatgtccacattgctttaggcccctgcataacaatt
caatatgttactaatatcataattcatggagttcacatccatgactgcaggccagcaggt
aatgccctggtgagatcttccccaactcactttgggtggagaacaatgtgtgacggagac
ggggtatcgattttcgggtcaagccacatttgggttgatcattgctcactctcccgatgc
gccgatggtctcatcgacgccatcatgggatcaactgccattaccatctccaacaaccac
tttgcccatcacaatgaggtgatgctacttggtcacagtgatgcctacacagctgatgtc
aatatgcaggtgaccatagccttcaaccattttggcaaaggtctcatacagcgaatgcct
agatgtagacacggctattttcatgtggtaaacaatgaatacacacaatggcaaatgtat
gctattggtgggagtgcaaaccccaccataattagccaaggaaaccgatttgtagcatct
gacaatcccttcgctaaagaggtaacgaaacgggagaacttcaatccaggtgtatggcag
cagtggaactggagatcagaaggagacctgatgttaaacggggccttcttcacgccatct
gggacaggggcatcatcaacctatccagaggcattgagtctgatggcaaggccaccttca
ctggtaaaaacccttacaaaaaccgcaggacccctttcttgtaggggaagagctacctgt
tag
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