Cryptomeria japonica (Japanese cedar): 131028772
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Entry
131028772 CDS
T10556
Name
(RefSeq) transcription initiation factor TFIID subunit 1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131028772
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cjf01001
]
131028772
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131028772
03036 Chromosome and associated proteins [BR:
cjf03036
]
131028772
Enzymes [BR:
cjf01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
131028772
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
131028772
Protein kinases [BR:
cjf01001
]
Serine/threonine kinases: Other
TAF1 family
131028772
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
131028772
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
131028772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
ubiquitin
Rad60-SLD
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
131028772
NCBI-ProteinID:
XP_057815094
LinkDB
All DBs
Position
5:737790443..737929982
Genome browser
AA seq
1928 aa
AA seq
DB search
MRNETSLISSEEKEEEDEEDYEDDHGENPIFGFMFGNVDNSGELDVDYLDEDAKGHLSAL
ANKLGPSLTDLEESVKERSSIFSDTTEQEDYDKKSENAVDYEDIQEQYEGPEVQTGLGED
RGFSRDEYFYAEAALAGPSSNLVASVLDEDNYDDEEEGADEKDAEPMEIPFEVQTTTEEQ
ISLIEAVNENDNNEDTTETESTTADKWECGLPILCKEDGKVVLRFSEIFGARESYRVGEK
KRSQKYKILKDQVCALENADVLEEDEELYLKGHYSRYNACKSVNLIQQGYQEEIDDSLED
ISHGNMHRVCTSPWDEVDWQGTKHSCVWAQPMKDNGTADFLGDHIEPLLSPNFYSLDQQE
WEAGILWDSPLKSSKLVEADDTPMEWHDEEDMDISIEKGKNESECLERQVQTAIERSHSN
YLLGYPIYVESFDQKSSVEDKRSTSSRRVWHPQMLRLELLSKMDKERDQRTEESKAGEAT
FGDIIKKLKKLSLQNSDLLDGSWVDKIVWEGGEDAPIAKLIFNLQDDQMLFEIVDAKEGR
HLRTHAAAMFISPSSKTGETGELANQASSIARFNISNDKYYSIRKTSQQQQKSHTKKRAF
HGIKIVHSLPAMRLQTMKPKLSNKDLANFHRPKALWYPHHNEVAAKEQGNLFAQGPMKII
VMSMGGKASKLHVDAAETLESVKGKAAKKLDFKPSEKIKFVYSGRELQEGMSLSQQDVRP
NSILHLVRTKIHPWPKAQRLPGENKPLRPPGAFKKKSELSVKDGHIFLMEYCEERPLLLG
NAGMGARLSTYYQKLTSSDQNAALLRNGSNCSGTIIQLEPTDKSPFLGDIKPGCSQSCLE
TNMYRAPVFPHKVASTDFLLVRSAKGKISLRRIDHLHVVGQQEPHIEVLSPGSKNVQNYM
VNRLLVYIYREFRATEKPRSIPFLRANELAAQFPNYSESFLRKRLKHCADLQKGPSGEML
WLMKRNFRIPSEEELRRMVTPENVCAYESMQAGLHHLKRLGINKLTMASGLASAMNQLPD
EAIALAAASHIERELQITSWNLSYNFVASTLQGRECIERLEITGSGDPSGRGLGFSYIRV
APKPPVSSALVKKKAAAARGGSAVTGTDADLRRLSMDAAREVLLKFNVDEDQIDKMTRWH
RIAMVRKLSSEQAASGVKVDATTLNKFARGQRMSFLQLQQQAREKCQEIWDRQFQSLSAA
ENEDVESDVDANSDLDSFAGDLENLLDAEEGEDGEVGDSSAKKDKREIARGYGVRRRTSQ
AQAEEEIEDEEAEAAELCRMLMDDDEAEEQKKKKAGTSFKGKRDQDMQESQKDLTLWNKD
DNCRKTKKVFKRIIHTTKPDGTRTTREVLITDPKEVEKYFANKNVSQKGKKNSGNNATLK
GLVLKKKSLPNKDIKKTSKVTKQKDKPVREGFICGACGQSGHMRTNKRCPSYNEDTDANV
EKLEGDSQKRVCASGEEVPANHASKAKVRKTPVKILQQVANIHSDVQKAEDVNLSNKLHG
KTFPLKFICRTASDKSTDYIGINESNNADGGDEMVAADEIRTQLSHAKKVKISTKSKKLK
ESETASWKLGSGQNDVNAVQIHAHKKASEVEKEHKIPKIKFKKPKEFPSDEQRRLIEIEK
EIEEQEQREKEEAEERRIQEALERQRERRAREEKAMWEEKEKKRLRDEREKEKRRLQEEE
KERQRILEEENMRNLWRAEEERRIWAERQRQAEELNLWVEKKRQEEERNLNWAKQRQQEA
AAAAKKREEFEKKERKKVKQKEREKMEKQRERDEYEKTNRHKRQDRRMPERDRGVKRRSQ
LEIGRYSSDYGQSSKRRRGGEANLSKALETIVDKLRNQTDVSFLFLKPVTKKEAPDYFNY
VEHPMDLTTIKQKVKRLDYKSRDEFRQDVALIADNAHTYNDGRNPGIPPLADQLLAFCDE
LLETYDGE
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacgagacaagtctgatttcctctgaagagaaagaagaagaagatgaggaagat
tatgaggatgaccatggagaaaatccaattttcggatttatgtttggaaatgttgataat
tctggggagcttgacgtggattaccttgatgaggatgcaaagggacatctttctgctttg
gcaaacaagcttggtccatctcttactgatcttgaagaatctgtcaaagaaagatcatca
attttttcagatacaaccgagcaagaagattatgataaaaaatctgagaatgctgtggat
tatgaggatatccaagaacagtatgaggggcctgaggtacagacaggcttaggtgaagat
cggggattctcaagagatgaatacttttatgctgaagctgccttggctggaccttcctca
aatctggtggcttctgttttagacgaagacaattatgatgacgaggaagaaggggcagat
gagaaggatgctgagccaatggagataccttttgaagtgcagactacgacagaggaacag
atttctttgatcgaagcagtaaatgagaatgacaataatgaagatactacagagactgaa
tcaacaactgcagataagtgggaatgtgggctcccaatactgtgcaaggaggatggaaag
gttgtcttgcgcttctctgaaatttttggggctagggagtcttacagagtgggggagaaa
aagagaagtcaaaaatataaaatattgaaggatcaggtttgtgcgttggaaaatgctgat
gttttggaagaagacgaagaattgtatttgaagggccattattcaagatataatgcgtgt
aaatctgtcaacctgattcaacaaggatatcaagaggaaatagacgattcattggaagat
attagtcatggcaatatgcaccgtgtctgcacttccccttgggatgaggttgattggcag
ggtacaaagcattcttgtgtctgggcccaaccaatgaaagacaatgggactgcagatttt
cttggggatcacattgagccgcttttatcgcctaatttctattcccttgatcaacaagaa
tgggaagctggtattttatgggacagtcctcttaaaagctctaagttggttgaagcagat
gacactcctatggaatggcatgatgaagaggatatggacattagtatagagaaaggtaaa
aatgaatctgaatgtttagaaagacaggtgcaaactgctattgagagaagccattcaaac
tacttgcttggttacccaatttatgtggagtcatttgatcagaaatcatctgtagaagac
aaaaggtcaacaagctcaagaagggtttggcatcctcaaatgcttagattggagttgctt
tcaaagatggataaagaacgggatcagaggacagaggaatcaaaagctggggaagcaaca
tttggagatataattaagaaattgaaaaaactgtctttgcaaaatagtgatttgttggat
ggttcttgggtggataagattgtttgggaaggcggtgaagatgctccaatagctaaattg
attttcaatcttcaagatgatcaaatgttgtttgagatagtggatgctaaagaaggtaga
catctacggactcatgcagcagctatgtttatttctccctcatctaaaacaggtgaaaca
ggagagcttgccaatcaagcttcttccattgctagatttaatatctccaatgacaaatat
tattcaattcggaaaacctctcagcaacaacagaaatctcatacaaagaagcgggcattt
catggaatcaaaattgtgcattctctgccggccatgagattgcagacaatgaagccaaaa
ttgagcaataaggacttggctaattttcatcgaccaaaggctctgtggtatccacaccat
aatgaagttgctgctaaagagcaggggaacctttttgcacaaggacctatgaaaattatt
gtaatgagcatgggagggaaagcaagtaagcttcatgtggacgcagcagagacactggag
tctgtgaaaggaaaagctgctaaaaaattagattttaaaccttcggagaagatcaaattt
gtgtattctgggagggaactacaggaaggaatgtctctttcccagcaggatgtgaggcca
aattcaattcttcatcttgtgcgtacgaaaattcatccatggccaaaggcgcaaaggttg
cctggtgaaaacaagcctctacgtccacctggtgcattcaagaaaaagtcagagctttca
gtgaaagatggacatatttttctcatggagtactgtgaagaaagacctcttttattagga
aatgctggcatgggtgctcgattatctacatactaccagaagctaacatcttctgaccaa
aatgcagctttgttgcgaaatggatcaaattgttcaggcacgattattcagttagagcca
acagataaatctccatttcttggagatattaagcctggttgcagtcagtcctgtcttgaa
acaaatatgtaccgtgcaccagtatttcctcacaaggttgcatcaacagactttctctta
gtccgttcagcaaaagggaaaatttctttaagacgaattgaccatctacatgttgtaggg
cagcaggagcctcatattgaagtactttctccaggctctaaaaatgttcaaaattatatg
gtaaataggctgttggtgtacatctatcgcgagtttcgtgctacagagaagcctcggagt
attccttttctacgagcgaatgaattggccgcacagttcccaaattattcggagtctttt
cttaggaagcggctaaagcactgtgcagatcttcagaagggaccaagtggtgaaatgtta
tggctaatgaagcggaatttccgtatcccatctgaggaagaattgagaaggatggtgaca
cctgagaatgtgtgtgcatatgagagcatgcaagctggtttgcatcaccttaaacgcctt
ggaatcaacaaactcactatggcatcaggtcttgcttcggctatgaatcaacttccagac
gaagctattgcacttgctgctgcatcacatattgagagggagcttcagataacatcatgg
aatttgagttataattttgttgcctccactttgcagggtcgtgaatgtattgaacgttta
gaaattacaggaagcggagatccctcaggtcggggccttggctttagctatatccgtgtt
gcaccaaagccaccggtatcaagtgctttggttaagaaaaaggcagctgctgcacgtggt
ggttctgctgttactggtactgatgctgatctcagaagacttagcatggatgcagctcgt
gaggttctgctcaagtttaatgttgatgaggatcagattgacaaaatgactaggtggcat
cgcattgctatggttagaaaactttcaagtgaacaggctgcttcaggggtgaaagttgat
gcaacaacattgaacaagtttgcacggggacaacgcatgtcatttcttcagcttcagcaa
caagcacgtgaaaagtgccaagaaatttgggatcgccaatttcagagtctgtcagctgct
gagaatgaggatgttgaaagtgatgttgatgcaaacagtgatttagactcctttgctgga
gatctggagaatttattggatgcagaggaaggtgaggatggggaagttggtgactcttca
gctaaaaaggataaaagagagattgctagaggatatggtgtaaggaggagaacctctcag
gcacaggcagaagaagaaattgaagatgaagaagcagaagcagcagaactatgtcggatg
ctcatggatgatgatgaagcagaagaacaaaagaaaaaaaaggcaggaactagttttaaa
gggaaaagagatcaagacatgcaggagtcccagaaggatttgaccctgtggaataaggat
gataattgcagaaagacaaagaaggtattcaagcgcattattcacacaacgaaaccagat
ggcaccaggacaacaagggaggttcttatcactgatccaaaagaggtggaaaaatatttt
gcgaataagaatgtatcacagaaaggaaagaaaaatagtggaaataatgcgactttgaag
ggattggttcttaagaaaaagagtctcccaaacaaagatattaagaagacctcaaaagtc
acaaaacaaaaggataaaccagtgagagagggcttcatttgtggtgcatgtgggcagtca
gggcacatgcgaacaaacaagagatgcccttcatataatgaagatacggatgcaaatgta
gaaaagctagagggggattctcagaaacgagtgtgtgcctctggtgaagaagtgcctgcc
aatcatgcatcaaaagccaaagtgaggaaaacgcctgtcaaaatccttcagcaagtagca
aatattcactcagatgttcagaaggctgaagatgtaaatctgagtaacaagttgcatgga
aaaaccttccctctgaagttcatatgtcggactgccagtgataagagcacagattacata
ggtataaatgagagtaacaatgcagatggcggggatgaaatggttgctgctgatgaaatt
agaacacagttatctcatgctaagaaagtaaagatttcaacaaaatccaaaaaactcaaa
gagagtgaaacagcatcttggaagttgggatctggacagaatgatgtcaatgcagtacag
attcatgcacataaaaaggcctctgaagtagagaaagagcacaaaattcccaaaattaag
ttcaagaagccaaaggaatttccgagtgatgagcagagaagactaattgagattgaaaag
gaaatagaagagcaggagcaacgtgagaaagaggaagctgaagaaagaagaatacaagag
gcattggaaagacagagagagaggagagcaagagaagagaaggcaatgtgggaggaaaaa
gaaaaaaagagattaagagatgagagggagaaagagaagagaagattacaggaagaggaa
aaagaaaggcagagaatcctggaagaagaaaatatgaggaatttatggcgagcagaagaa
gagaggagaatttgggcagagaggcagcgacaagcggaagaattaaatttatgggtagag
aagaagcgacaagaggaagaaagaaatttaaattgggcaaagcagaggcaacaagaggct
gcagcagcagcaaagaaaagagaagaatttgaaaaaaaagaacggaagaaagtgaaacag
aaagaaagagaaaagatggaaaagcagagagaaagagatgaatatgaaaagacaaatagg
cataagagacaagatagaagaatgcctgaaagagacaggggagtcaaaaggcgttctcaa
ttggagattggacgatattcttcagattatggccaatcttcaaagcgacgaagaggagga
gaggctaatttgtccaaagcattggaaaccatagtggacaagcttagaaatcagactgac
gtgtcatttttgtttctaaaacctgtaaccaagaaggaggccccagactattttaattat
gtggaacatccaatggatctcactacaattaagcagaaagttaaaaggcttgattacaaa
agtcgagatgaatttcgacaagatgttgctctaattgcagataatgcacacacatataat
gatggtagaaatcctggcattcctccacttgcagatcagcttcttgcattttgtgatgaa
ctcttagagacatatgatggagaatga
DBGET
integrated database retrieval system
