Cryptomeria japonica (Japanese cedar): 131028822
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Entry
131028822 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131028822
03420 Nucleotide excision repair
131028822
03430 Mismatch repair
131028822
03440 Homologous recombination
131028822
03460 Fanconi anemia pathway
131028822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131028822
03032 DNA replication proteins [BR:
cjf03032
]
131028822
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131028822
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131028822
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131028822
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131028822
MMR (mismatch excision repair)
131028822
DSBR (double strand breaks repair)
HR (homologous recombination)
131028822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
tRNA_anti-codon
OB_MEIOB_N
POT1
Motif
Other DBs
NCBI-GeneID:
131028822
NCBI-ProteinID:
XP_057815153
LinkDB
All DBs
Position
5:complement(238246378..238247595)
Genome browser
AA seq
405 aa
AA seq
DB search
MIDDEGTEIRITCFGNVAEMHYHRVEPGTYYTVSKGCVKEANTKWNKLNSHLEITLDNNS
ILKRCDVVVESEANNSQFTPINEITYCTNNTLVDVIGIVVTIGKPSLIHRKDGSEVTKRT
VKINDVSTFTIDVNLWGATWQGLGEDLKNMHTTQTVVVLAVRNARVGYFNGKVINTTTAT
TLNINPSIPETETLMSRGKIPDALLPLSCVVGQLNSQYSRMTITAVLECTSVLSEIVETT
IRVVVRIIKIYSFCYPACPLKFNGKECKKKCVQQNDNQWFCSRCQTHVPECNYKYLLQMK
LQDHTGTLWATAFDEVGTNILQISAKELYMLQYNLTTQKTPQSIIKRVLLSSFVFTLSIT
IDMYNSEPRLKAMITKVAKIDYQAESALLLAEIARMTTTAEFQTN
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatagatgatgaaggtactgaaattagaataacttgctttggcaatgtagcagagatg
cattatcatagggttgaaccaggaacatattatactgtgtcaaaaggttgcgttaaagaa
gctaacactaaatggaataagcttaacagccatcttgagataactttggacaataattca
atattgaagcgttgtgatgttgttgttgaaagtgaagcaaataattctcaattcacacca
atcaatgaaattacatattgcaccaataacactttagttgatgttattggtattgtagtt
actattggaaaaccctcattaattcacaggaaggatggaagcgaagtaacgaagagaact
gtaaaaataaatgatgtctcaacttttactatcgatgttaacttatggggagcgacatgg
caagggctaggtgaagatttgaagaacatgcacacaacccaaacagttgttgtccttgca
gtcagaaatgctcgtgttggttatttcaatggaaaggtgatcaacacaaccacagcaaca
actctaaatataaacccttctatccctgaaacagagacacttatgtcaagaggaaagatt
ccagatgcccttttaccgttgtcatgtgttgttggacagcttaactcacaatacagtagg
atgacaatcacagctgttttagagtgtacaagtgttctctctgaaatagttgaaactact
attagggttgttgtgagaatcattaaaatttattctttttgttatccagcttgccctttg
aaatttaatggaaaagagtgtaaaaagaaatgcgtccagcaaaatgataatcaatggttt
tgttcaagatgtcaaactcatgtgccagaatgcaattacaaatacttattgcagatgaag
ctccaagatcatacaggcactctttgggctactgcctttgatgaggttggcacaaatata
ctgcaaatatctgccaaggagctttacatgctgcaatacaatttgactacacaaaaaaca
cctcagtccattatcaagcgtgtgcttttgtcttcctttgttttcacactctctattaca
atagacatgtacaattcagagcccaggctcaaagcaatgattaccaaagttgccaaaatt
gattaccaggctgaaagtgctcttctgcttgcagagattgctcggatgactacaactgca
gagttccagaccaattag
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