Cryptomeria japonica (Japanese cedar): 131029046
Help
Entry
131029046 CDS
T10556
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131029046
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131029046
Spliceosome [BR:
cjf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131029046
Complex C
U4/U6.U5 tri-SnRNP related factors
131029046
Ribosome biogenesis [BR:
cjf03009
]
Eukaryotic type
Pre-60S particles
Helicases
131029046
Transfer RNA biogenesis [BR:
cjf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131029046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131029046
NCBI-ProteinID:
XP_057815426
LinkDB
All DBs
Position
2:187850381..187970111
Genome browser
AA seq
1012 aa
AA seq
DB search
MEDSPTLGKRKAEENVDGKSNTSHEGGDVPGEAVQADPKRRNLVRTCIHEVAIPSGYVST
VDETLHGSISDPSYKGPMAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYA
IAMAFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVSLSPNATCLVMTTEILRG
MLYRGSELLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAE
WICKLHSQPCHVVYTDFRPTPLQHYAFPIGGSGLYLVVDEKEQFREDNFMKLQEVFPKKI
MDDGLAPAKNGLGLHGNAKGGSKGAKPAKAPGGDIYRIVKMIMEKKFQPVIIFSFSRREC
EQHALSIMSKLDFNSEEEKQDVEQVFQNAILCLNEEDRNLPAVELMLPMLRRGIAVHHSG
LLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTQLRKFDGDNHRWMASGEYI
QMSGRAGRRGKDERGISIIIVDEQMEMKTCKEMIMGKPAPLVSTFRLSYYTLLNLMSRAE
GQFDQEYVIKNSFHQFQHEKALPEVEARVSKLEQEAAILDASEEAALAEYHKLRLHISQL
EKQMMHEISRPERVLLFLVPGRLVKVRDGVTEWGWGVIVNTVKKPPASGILPSTILTNRT
SSYLVDTLLHCTSTMTSDGPRPKPRPALPGQKGEMHVVPVQLPLICSLSALRVAIPQDLR
PPEARQSVLMAVQELEKRFPKGLPKLDPIEDMGIDDPDFVKIVKEVEETEQKLLCHPMHK
SEQDENQYKSFQRKAELNNEAHQLRLKMRESQLHKFREELRNRSRVLKRLGHIDADGVVQ
LKGRAACFIDTGDELLATELMFNGIFNELDHHQVASLASCFIPCDKSNDVIHLSKELEKP
LQQLQDSARRIAEVQRECKLDVNPEEYVESISRPYLMDIIYHWSKGASFAEVTSRTDVFE
GSIIRTTRRLEEFLNQLKAAANAIGDAALEKKFEASSGSIRHGIIFANSLYL
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggaggattctccaactctaggtaaacgaaaggccgaagaaaatgtcgacggcaagagc
aacacaagtcatgaagggggcgatgttcccggtgaggctgtgcaagccgatccaaaacgc
cgcaacctggttcgaacttgcattcacgaggtggcaataccctcgggctatgtttccaca
gttgacgaaaccctccatggtagcatttcggatccctcatacaagggtcccatggcgaaa
acctacccctttacactggaccccttccagcaggtatccgtggcatgtcttgagcgcaac
gagtcggtgctggtttccgcccatacttccgcagggaaaactgctgtagcggaatatgct
atcgccatggccttcagagacaagcagagagtaatttatacttcccctttgaaagcccta
agtaaccagaagtacagggagctcagtcaagagttctcggatgttgggttaatgacgggt
gatgtcagtttgtctcccaatgccacgtgtcttgtcatgacgactgagattctcagaggg
atgttgtataggggttccgagcttcttaaggaggtcgcttgggttatttttgatgaaatt
cactacatgaaagacagggagcgcggcgttgtgtgggaagaaagtataattttcttgccc
cctgcaattaaaatggtgtttctgtccgctaccatgtctaacgccacagaatttgcagag
tggatttgtaaattacactctcagccttgtcacgtcgtctacactgatttcaggccaact
ccgcttcagcattatgcctttcctatcggtggttcaggtctgtatcttgtggtggatgag
aaggaacagtttagggaagataattttatgaaattgcaggaggtgttccccaagaaaata
atggatgatggattggcaccagcaaagaatggtctcggtttgcatggcaatgccaaaggt
gggtcaaagggtgcaaagcctgcgaaagctcctgggggagacatatacagaattgtgaag
atgattatggaaaagaagtttcagcccgtcattattttcagttttagtcgccgtgaatgc
gaacagcatgctctctctataatgtctaagcttgacttcaattctgaggaagagaaacaa
gatgtggagcaagtttttcaaaatgcgatactatgccttaatgaggaagacagaaatctt
ccagctgtggaattaatgcttccaatgctgagaaggggcattgcagtacatcattcgggt
cttttaccaattattaaagagttggttgagcttctttttcaggaaggtcttgtaaaagct
ctttttgctacagaaacgtttgcaatgggactgaatatgcctgcaaagactgtggtgttt
acacagcttagaaaatttgatggtgataaccatcgctggatggcttctggagaatatata
cagatgagtggcagagctggaagacgaggaaaagatgaacgtggcatctctattatcata
gttgatgaacagatggagatgaaaacgtgcaaggaaatgatcatgggaaaacctgcaccg
ttagttagtacgttcagattaagttactacacgttgttaaatttgatgagtcgagctgag
ggccagtttgatcaagaatatgtgataaaaaattctttccatcagtttcaacatgagaag
gcactacctgaagttgaagcaagggtctccaagctagagcaggaagcagccatacttgat
gcatcagaggaggccgcacttgcagagtaccataaattaaggcttcatatatctcagcta
gagaagcaaatgatgcatgaaatatccaggcctgagagggttcttctgtttttggtacct
ggtagactggtgaaggtaagagacggtgtcactgaatgggggtggggagtaattgtaaat
acagtgaaaaagccaccggcatctggtatattaccttctacaatattgactaatcgaact
agtagttatttagtggacactcttctacactgtacttctacaatgacaagtgatggtccc
cgtccaaagccacgtcctgctcttcctggtcagaaaggtgaaatgcatgtggtgcctgtt
caactgccactcatatgctcgctcagtgcattgagagttgctattccccaagatctacgg
ccaccagaagcaagacagagtgtccttatggcagtgcaagagctagagaaaagatttcca
aaaggactcccaaagcttgatcctattgaggatatgggtattgatgatcctgattttgta
aagattgtaaaggaagttgaagagactgaacaaaaactgctttgtcatccaatgcataag
tctgaacaggatgagaaccagtataagtcatttcaaagaaaagcagaattaaataatgaa
gctcatcaacttcgtttgaagatgcgtgaatctcagcttcataaatttagggaagaatta
agaaatcgctcaagagtacttaagcgacttggacacattgatgctgatggtgtggtgcaa
ttgaaaggacgggctgcatgttttatagacacaggagatgagctccttgcaacagaactg
atgttcaatggcatattcaatgagctagaccatcatcaagtagcgtcacttgcaagctgt
ttcattccgtgtgacaaatcaaatgatgttatacatctgagtaaggagcttgaaaagcca
ttacaacaacttcaggatagtgcacgacggattgcagaggtgcagcgcgagtgcaagtta
gatgtaaacccggaggaatatgttgagtcaataagccgtccatatctgatggatattatt
taccattggtctaagggtgcttcatttgcagaagttaccagtaggacagatgtgtttgag
ggcagtattatacgcacaaccaggaggttggaggagttcctgaatcagctgaaagctgca
gcaaatgcaattggagatgcagcactagagaagaaattcgaggctagcagtggaagcatt
cgacatggcattatttttgccaattcattgtatttgtag
DBGET
integrated database retrieval system
