Cryptomeria japonica (Japanese cedar): 131029459
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Entry
131029459 CDS
T10556
Name
(RefSeq) protein CHROMATIN REMODELING 35
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131029459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131029459
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
131029459
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
PKMT_2nd
Motif
Other DBs
NCBI-GeneID:
131029459
NCBI-ProteinID:
XP_057815939
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Position
4:560536634..560681020
Genome browser
AA seq
954 aa
AA seq
DB search
MGKRKLSESQAGPRNPILSIRACHSAKDPHEKCTACASHTESKPKKKVKDSSDHITYGSV
REKILNATAQGQKLEKQLSKLLNMKFPIKLQKNKTISEIVKSSPKQSQSEKGPICSSYCL
NISDSTDSDTELSEIRGVTKLNKDGINPGCFSQNSETLKEENCATELNHSVAETKHSHLE
VENQTDHQLREMDGSQEKEAVELQLEIENQNSCLYRDTDDLQMKGNVELQQEIENHTDHL
LKETHESQIREDVEIQNDLLCMSPNAEFQASMQEGNNKDDEISYLWRQMLTSFECSKNSQ
ENVLENVSKHEPDCKHSFLHREDLGRVCMLCGLIGQRAEAIFDFEWSKARRRSNQPRDTC
RENSRIFSEDNIIEVHNGKNTAQRFPILNLVLHPLLEGRMHQHQLDGFEFLKKNLIAEKP
GGCILAHAPGTGKTFLVVSFIQSFLAKYPEERPLIVAPKSMLCTWMKELKQWEIEQVSLY
NLYEVNNRLEPSRCNQLEILKEWREKKGILLVSYAQFSSIVSEKLEKPGNDMKASHQCRN
ILLECPGLLILDEGHFPRNSGTNILNSLMQIHTKRRVLLSGTLFQNNITELFNLLRLVRP
DILEEELFETIYKRILEGEKHFKRTQRKHYMIQKIFCEEMDYNLQNGSKEMKASAVGNLQ
ELLSPFIHYYKGGILENLPGLTEFVVILKLNAAQREALNSLKTSTGSRLSKDIQSSAVCI
HPSLLKISIGKEDNASGWLDSNSSNVDDIVVDPNDGVKTKFVLDMLSLCNVNEEKLLVFS
QFLSPLALVENMITRTKNWTRGSEILRLDGNTASEDRETIIDKFNKSKDTKILFASIKAC
GEGINLTGASRVIILDIAWNPAITRQAISRAFRIGQTKKVYAYRLIVADTLEEEIHRASF
DKEFLSKMIFDGNDQCENSGSLMLEVNENECEDPFFESKALKENVKTLYKLKFV
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaagaaagctttcagaatctcaagcaggtccaaggaacccaatcctgtcaatt
cgagcttgtcatagtgcaaaagacccccatgagaaatgtactgcatgtgcatcacataca
gagtccaaacccaagaagaaagtgaaagactcaagtgatcatatcacttatggaagtgtc
agagagaagatattaaatgctactgcacaggggcagaagttagagaagcagctgtccaag
ctattgaacatgaaatttcctatcaaactccaaaagaataaaactatttcagaaattgta
aagtctagtccaaagcagagtcaatcagaaaagggacctatttgctcttcatattgcttg
aatatatcagattctacagactctgatacagaactgtcagaaattcgaggtgtaaccaaa
ctaaacaaggatggcataaacccaggttgcttttctcaaaattcagaaactttgaaagaa
gaaaactgtgccactgagttgaaccattcagttgctgagacaaaacattcacatctggaa
gtggaaaatcagacagaccatcaactaagagagatggatggctcacaggagaaggaagct
gtagagttgcaactagaaattgagaaccagaatagctgtctatatagagacacagatgac
ttacaaatgaagggaaacgtagaattgcaacaagaaattgagaaccatactgatcatctc
ctaaaggaaacacatgaatcacaaattagggaagatgtagaaattcaaaatgatttgttg
tgtatgagcccaaatgctgaattccaggcaagcatgcaagaaggaaataataaagatgat
gaaatttcgtatctgtggagacaaatgcttacgtcttttgagtgttcaaagaattcccag
gagaatgttctagagaatgtaagtaaacatgaaccagattgtaagcattccttccttcac
agagaggatcttggtcgcgtttgcatgctttgtggactgattggccaaagagctgaagca
atatttgactttgagtggtcaaaggcacgtaggaggtcaaatcagcccagggacacctgc
cgtgaaaattctaggatcttttcagaagataatattattgaagtacacaatggtaaaaac
acagcacaaagatttcctatactgaacctcgttcttcatccactattggaaggacgtatg
caccagcatcaacttgatggttttgagttcttgaaaaaaaacctaatagctgaaaagcct
gggggatgcattttggctcatgctccagggactggaaagacttttcttgtagtaagtttt
attcaaagttttctagccaagtacccagaagagaggcccttgattgtagcaccaaagagt
atgctatgcacatggatgaaggaactcaagcagtgggaaatagagcaagtttctctatat
aacctttatgaggtcaacaacaggctggaaccatcaaggtgtaaccagctggagatattg
aaagaatggagagagaaaaaaggtattcttcttgtcagttatgctcaattctcaagcata
gtgtctgagaagctggagaagcctgggaatgatatgaaggccagccaccaatgccggaat
attcttctagaatgtcctggattgctgattttagatgaaggacacttcccacgaaatagt
ggaacaaacatattgaattcccttatgcagattcatactaagcgtagggtgcttttatct
gggactctcttccagaataatattacagagctatttaaccttttgaggcttgtaaggcct
gatattctagaagaggaactttttgaaaccatttacaaacggatattagaaggtgaaaag
catttcaaaaggacacaaagaaaacattatatgattcaaaagatattctgtgaagaaatg
gattataatttgcagaatggcagtaaggaaatgaaagcatctgccgtgggcaatcttcaa
gagttgctttcaccattcatccactattataagggaggaatccttgaaaatttgcccggg
ctgacagagtttgtggtgattttaaaactcaatgctgcacagcgggaagcacttaatagt
ctgaaaaccagtacagggtccagactcagtaaagatatacagtcttctgctgtttgcata
catccttcactgctgaaaataagtatagggaaagaagacaatgcttctggctggttggat
tctaatagtagcaatgttgatgatatagtagtggatcctaatgatggtgtgaagactaaa
ttcgttcttgacatgctttcactttgcaatgtgaatgaagagaagctgttagtttttagc
cagttcctttcccctttagccttagttgaaaatatgattactagaacaaagaactggact
agaggcagtgaaattctaagacttgatggtaacactgcttcagaggatagggaaacaata
attgacaaattcaacaagtcgaaggacacaaagattctttttgcctcaattaaagcatgt
ggagaaggcattaatcttacaggtgctagcagagttatcatccttgatattgcatggaat
cctgctattactcggcaggcaataagtagagctttcagaataggacagacaaaaaaggta
tatgcatatcgtctcatagttgcagatacattagaggaagaaattcatagagcttcattt
gacaaggaatttttgtcaaagatgatttttgatggaaatgaccaatgtgagaattcagga
tcccttatgctcgaggtaaatgaaaatgaatgtgaagacccattttttgaaagtaaagca
ttgaaagaaaacgtcaaaaccctatacaaattgaaattcgtttga
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