Cryptomeria japonica (Japanese cedar): 131030388
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Entry
131030388 CDS
T10556
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131030388
03036 Chromosome and associated proteins [BR:
cjf03036
]
131030388
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
131030388
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
131030388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
HTH_44
Spt6_S1
Tex_central_region
HHH_9
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
131030388
NCBI-ProteinID:
XP_057817172
LinkDB
All DBs
Position
4:441589767..441612121
Genome browser
AA seq
1773 aa
AA seq
DB search
MGARNIVSDDEEEYEESDIRDARDTEAVDEEDEEEAEEEGQDEYEKDGFIVDDVEEEEEE
ARESSDEEMKARKKKRKKREAEENYELDEDDYELLQEANVTGFHRPKSQGSKKFKRLKKA
GKNDRIEEKTGFSDEDELEEGGWTGATAEEKLKRSLFGDDEGVPPEDVAEEEDQLEEEEE
EDMGEEDEMADFIVDEEEVDENGLPVRRRRKSKKRISRQAPGISSIALQEAQDIFGDVDE
LLSRRKQGLKARGFDGLGGLDDDQGGRRLEDEFEPSILAEKYMTAKDDDIRETDVPERFQ
LSEEITGPVPHNENTVPEAKWIYEQVFGSLAVPIRKEFQHIAQLDKEEVVKDIANVLKMF
HDQKLEVPFIAMYRKEMCLNLLRDLEYSSTEAADKSADKPTDKAADKEKKSKMKMYKALW
EIQLRDRKWLLLQRRKTALKASYEKRAGEEARRDPIKWKLLETVFQSLDDAESERTIDDL
DTKFNLHFPPDEIEVEEGQFKRPKRKSMYSICRKSGLGAVSRNFGLTSEQLGKNLLAMYK
MHEVEDDSNAPEDVAAGFSAGEFGDPQSVLKGARHMAAVEISCEPAVKEYARTFYMEKAV
VTTKPTADGNNAIGSFHQYARVKWLNNKPISKFDDAQWLLIQKAEEEKLLQVTIGLPKDD
LDGTLMNEFEAFYLSDGVSRSAQLWNEQRKLILKDAICNYILPSMEKEARIVLSARAKNW
LVQDYGYQLWKRVSVAPFQRQKPDNDESSEEDAETRIMVCCQGSNKDPTTFVMLDPAGEV
LDILFTSHLSIRSKNSGLQKRKENDQQRLLKFMMDHQPHIVVLGASNLRCKYLKDDIFEV
IFKIVEEHPRDLAEGLDTINVVYADEFLPTLYENSRISQDQLPTQRGIVRRAVALGRYLQ
NPLAMVATLCGPGKEILSLKLHSLEHFLSLDDKYEAVEQVMVTVTNQVGVDINLAASHEW
MFSPLQFVAGLGPRKAASIQRAILRAGRVYSRRELLTPLEAMKRLVFINAAGFLRVRGTG
QAASGNHVMDPLDDTRIHPESYELAKKMAEDVYCEDAGQDIDDMDEETQEMAVEHVKKYP
NLLMTLDIDEYARSVEQRTSNKKRETLADVKIELVHGFKDWRTPYKEPSQDEEFYLLTGE
NEETLSVGKIVQATARRVLNNRIICDLESGLTGIIMKEQLSDDIDIDPIEKVAEGSILTC
RVKSMQKAKYLVDLTCKASELRNDNWQPQNGEVKEVKDPYFAKADTIKQSEQENARKAKE
LAKKSFKPRMIVHPRFLNISEDETIKFLSDKDAGESIIRPSLKGPTHLMLTLKIFDGVYA
HKDIVEGGKDHRDFASFLRLGKTLSIGEETFEDLDEVIDRYVDPLISNLKAILDYRKFRR
GTKAEVDDALRKEKYENPTRIPYYISVSHEHPGAFLLSYIRSTNPHHEYFGLYPKGFKFR
KRMFDNLDKLVSYFQKHINDLVQQDSLPPIRSVAAMVPMKSPGPGGSAGGGGSVGSGWGG
SATNSGGGGDGGWAGSAMDGGRGGDGGWRGSATNSGGDGWQGPMGTDWERSSTPGSRTGG
NDYHLHSASGGLPSGLPRPPNSRERGRGVRGGGSSSAGWNEGRDGGFDRGGNEGRGGGMR
GRWSEDGRNRWGRNNGRGIGSGRGANEANINNRWGRNSGDAWGSKTEEWGSNSGSRIPES
PARGAWPVSSGESELNRRGSDGWDTGKLSDGWNSAKVSDRDATLKDSTGRQEGLSKVGDD
MPSTSKDWAKQPSGWDHAAAGSNGSVGGSGWES
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccagaaatattgtgtctgatgatgaagaagagtatgaagaaagtgacatcaga
gatgctcgtgatacagaggcagttgatgaagaggatgaagaggaggctgaagaggagggg
caggatgagtatgagaaagatggcttcatagttgatgatgttgaagaggaagaagaggaa
gctagagaaagtagtgatgaagaaatgaaagcaaggaaaaaaaaaaggaagaaaagggag
gctgaagagaattatgaacttgatgaagatgattatgagttactacaagaggccaatgtg
actggttttcaccgtccaaaatctcagggcagcaagaagtttaaacgccttaagaaagct
ggaaagaatgatcgcatagaggaaaagacgggcttttctgatgaggatgagttggaagag
ggtggttggacaggtgccactgcagaggaaaaattgaaacgtagtttgtttggggatgat
gaaggagtgcccccagaagatgttgcagaagaggaagaccagcttgaagaagaggaggag
gaggacatgggtgaagaagatgaaatggcagattttatagttgatgaagaagaagtggat
gaaaacggcttacctgtaaggaggaggaggaaatcaaaaaaacgaatatccaggcaagct
ccaggcatatcatctattgctttgcaagaagcacaggatatatttggtgatgtggatgaa
cttttgagtcgtcgaaagcaaggtctgaaagcaagagggtttgatggtttaggaggactt
gatgatgaccaaggtggaaggagacttgaggatgaatttgagccaagcattctggcagag
aagtacatgacagctaaggatgatgatattcgtgaaacagatgtgcctgaacgatttcag
ttgtctgaagagattactggtccggttccacacaatgagaatacagtaccagaggcaaag
tggatatatgagcaagtatttggctcattagcagtacccattaggaaagagttccagcat
attgcacagctggacaaggaagaagtagtgaaggatattgctaatgtgttaaagatgttc
catgatcaaaagttagaagtcccctttattgctatgtatcggaaagaaatgtgtctcaat
ttacttcgagatctagagtacagctctacagaagctgcagacaaatctgcagataaaccc
acagataaagccgcagacaaagaaaagaagtctaaaatgaaaatgtacaaggcattgtgg
gaaatacagcttcgggatagaaaatggcttctacttcaaaggaggaagactgctctaaaa
gcatcttatgagaaacgtgctggagaagaagcaagaagagatccaatcaaatggaagcta
ttagaaacagtttttcagtcccttgatgatgcagagtctgaacggactattgatgactta
gatacaaaatttaacctgcattttcctcccgatgaaattgaggtagaagaaggtcagttc
aagaggccaaaacgcaaatccatgtatagcatctgtcggaagtctggactgggggctgta
tcaagaaatttcggtcttacctctgagcaactgggcaagaatctattagctatgtataag
atgcatgaggttgaagatgatagtaatgcaccggaggatgtggcagctggattttctgct
ggagaatttggggatccacagtcagtgctcaaaggtgctaggcacatggcagcagtagaa
atcagttgtgagccagctgttaaggaatatgcccgtactttctatatggaaaaggcagtt
gtaactacaaagcctactgctgatggtaacaatgctataggttcgtttcatcagtatgct
agggtaaagtggctaaataacaagccaataagtaagtttgatgatgcacagtggcttctc
attcagaaagctgaagaagagaaacttcttcaggttactattggtttgcctaaggacgac
ttagatggcactttaatgaatgaatttgaagctttctatcttagtgatggggtgagcaga
tctgcacagctttggaatgaacaacgtaaattaatattgaaggatgccatatgcaattac
attttgcctagtatggagaaggaagctcgaatagtgttgtctgcaagagccaaaaactgg
ctggttcaggactatggatatcagctgtggaagagagtctcagttgcaccttttcagcgt
cagaaacctgacaatgacgagtcatctgaagaagatgcagaaacacgtataatggtctgc
tgtcaagggtccaataaagatccaacaacatttgtgatgctagatcctgctggtgaagtt
cttgatattctttttacatcacatctaagtattcgttcaaagaattctggtctgcaaaag
cgaaaggagaatgaccagcagcgccttttgaagtttatgatggatcatcaacctcatata
gttgttttgggagcctcaaatttgcgttgtaaatacttgaaggatgatatctttgaggtt
atttttaagattgtggaggagcatccacgtgatttggcagaaggcttggacacgataaat
gttgtttatgcagatgaatttttacctacactttatgagaattctcgcatctctcaggat
cagttgccaacacagagagggattgtgaggcgtgctgtggctcttggtcggtatcttcag
aatccattggccatggttgcaacattatgtggtcctggcaaggagatattatcattgaag
cttcattcactggaacatttcctgagtctagatgacaagtatgaagctgtcgaacaggta
atggttacagtaaccaaccaagttggtgttgacataaacctagcagcatcacatgaatgg
atgttttcacctctgcaatttgtagctggccttggaccaagaaaagctgcttccatacaa
agggctattttgagggctggaagggtttacagtcgcagagaattgttgacccctctagaa
gctatgaagcgacttgtatttataaatgctgctggttttttaagggttagagggactggg
caagcagcttctgggaaccatgttatggatccattggatgatactagaattcatccagag
tcatatgaactagccaagaaaatggctgaggatgtatattgtgaagatgcaggacaggat
atagatgacatggatgaggaaacacaagaaatggcagttgaacatgtcaaaaaatatccc
aatctgttaatgactcttgatatagatgaatatgctagaagcgtggaacaaaggacatcc
aataaaaagcgggaaacacttgctgacgtaaagattgaattggtacatggattcaaggat
tggcgaacaccatataaagagccatcccaggatgaggaattttatctgctaactggagaa
aatgaagagaccctttcagtggggaaaattgtacaagcaactgcccgtagagtcctaaat
aatcgcataatttgtgatctggaatcaggtttgacaggtataataatgaaggaacagctt
tctgatgatatagatatagatccaatagaaaaggttgcagaaggcagcatccttacctgt
cgggtgaaatctatgcaaaaagcaaagtatctagttgatttaacttgcaaggcgagtgag
ctgaggaatgataactggcagccgcagaatggagaggttaaggaggttaaggatccatat
tttgcgaaagcggataccattaaacaaagtgaacaagagaatgcaaggaaagcaaaggaa
cttgcaaaaaaatctttcaagcctcggatgattgtgcatccacgcttcctgaatatttca
gaggatgaaaccattaagtttttatcagataaagatgcaggagagagtattatccgtcca
agtttgaaagggcctactcacttgatgctaactctgaaaatatttgatggagtttatgct
cacaaggatattgtggaaggaggaaaagaccatagggattttgctagtttccttcgactt
gggaaaacactttcaattggggaggagacatttgaagatcttgatgaggtcatagataga
tatgtggatccgctcattagcaatttgaaggcaatccttgactacaggaaattcaggagg
ggaacaaaagcagaggttgatgatgcattacgaaaggaaaaatatgaaaatccaacaaga
attccatattatatatctgtttcacatgaacatcctggggcatttttgcttagttatatt
aggagtacaaatcctcatcacgagtattttgggctatatccaaaaggatttaagttcaga
aagagaatgtttgacaatctggacaagctggtttcctattttcaaaagcatataaatgat
cttgtccaacaagattctcttcctccaattaggtcggttgcagcaatggttcccatgaaa
agcccaggtccgggaggatctgcaggtggaggtggttctgttggaagtggttggggagga
tcagccacaaacagtggtggagggggagatggtggctgggcagggtcagccatggatggt
ggtagagggggagatggtggttggagaggatcagccactaatagcgggggagatggttgg
cagggccccatgggtacagattgggaaagatcatccacaccaggttcaagaacaggtgga
aatgattatcatcttcatagtgccagtggtgggcttccaagtggtttacctaggccacca
aacagtcgagaaaggggaaggggagtaagaggtggtggcagtagcagtgctggttggaac
gaaggaagagatggtggatttgatagaggtggaaatgagggcaggggtggaggtatgaga
ggtaggtggagcgaggatggaagaaacagatggggaagaaataatggaagaggtataggg
tctggaaggggagccaatgaagcaaatattaacaataggtgggggcgaaattctggtgat
gcatggggatcaaaaactgaggaatggggcagcaattctggcagcagaattccggaatct
cctgcacgaggagcttggcctgtgagctctggggaaagtgagttgaacagacggggaagt
gatgggtgggatactggaaaattaagcgatggctggaattctgccaaagttagtgatcgt
gatgctacattgaaagatagtacaggcagacaagagggtctcagtaaagttggtgatgac
atgccaagcacttcaaaagattgggctaaacagcctagtggatgggatcatgcagcagca
ggtagtaatgggagtgttggaggtagtggttgggagtcataa
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integrated database retrieval system
