Cryptomeria japonica (Japanese cedar): 131030416
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Entry
131030416 CDS
T10556
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF2
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131030416
04121 Ubiquitin system [BR:
cjf04121
]
131030416
Enzymes [BR:
cjf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131030416
Membrane trafficking [BR:
cjf04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
131030416
Ubiquitin system [BR:
cjf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131030416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
DUF1117
zf-C3HC4
zf-RING_11
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf-C3H2C3
Rad50_zn_hook
zf-RING-like
FAR1_N
Zn_Ribbon_YjdM
VPS18_RING_C
IBR_1
Motif
Other DBs
NCBI-GeneID:
131030416
NCBI-ProteinID:
XP_057817232
LinkDB
All DBs
Position
4:439166382..439168670
Genome browser
AA seq
344 aa
AA seq
DB search
MSFAYWCHQCNAMIRLDGGQEMVCPTCNGGFVEEMERGERESRRQLSHAHHLLGCISNLL
GHLEGRRRPGRGRLSFTPMLILRRNPNPSGAEGESASIEVYFDSGSGVGGLRRLPPHLTE
YFMGFGLDRLIEHLSNSDPGVACGALPASRSAVDAMPAFQIAENHLGHDLHCAVCKDAYE
IGEQALEMPCKHIYHSDCILPWLSQHNSCPVCRHAMPTEDQTQTPSPSPSSSSAGTGEIG
LTIWRLPGGGFAVGRFSGESLINFNNNNTEGVREASTDNRRESGPSDGENQGRRRNPFSF
LWPFRSSSSNTESQNTPSSSNDQNSRRRAGWPFEDGIGPSRWFS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcatattggtgccaccagtgtaatgccatgattcgtctggatggcggtcag
gaaatggtttgccccacttgcaatgggggattcgtggaggaaatggaaagaggggaaaga
gagagtaggagacagctctctcatgcccaccacctgttgggctgcatttctaatctgttg
gggcatttggaggggaggagaagacctggccgtggcaggctttcctttacgcctatgctg
attctgcggagaaatcccaaccctagcggagcagaaggggagagtgcgagcatcgaggtg
tatttcgacagtggatctggggtcggcggactcagacgattgccgccccatctgacggag
tatttcatgggcttcggactggatcgcctcatcgaacatctgtcaaatagtgaccccggc
gttgcctgtggggcgctgccggcttcgagaagtgctgtggacgccatgccggccttccaa
atcgcggaaaaccatctgggccacgatttgcattgcgccgtttgtaaagatgcctacgaa
atcggcgagcaagcccttgaaatgccatgtaagcacatctatcactctgattgtattctt
ccatggctttctcagcacaattcctgtcctgtctgccgccatgcgatgcccacggaggat
cagactcagacgccttcaccttctccttcgtcttcctcagctgggacaggagagattgga
ctaactatatggaggcttcctggcggtgggtttgcagtggggaggttttctggtgaatct
ctcataaacttcaataataataatacagagggagttagggaggcgagtactgataatcgg
agagaaagtggtcctagtgatggtgagaatcagggccgcaggcgtaatcctttctccttt
ctgtggccttttcgatcatctagctccaatacagagtcccagaatacaccaagttctagc
aatgatcaaaactctaggaggcgcgctggttggccatttgaagatggcattggtccttcc
cgatggttcagttga
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