Cryptomeria japonica (Japanese cedar): 131030431
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Entry
131030431 CDS
T10556
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03410
Base excision repair
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131030431
03410 Base excision repair
131030431
03420 Nucleotide excision repair
131030431
03430 Mismatch repair
131030431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjf03032
]
131030431
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131030431
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131030431
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131030431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
AAA_22
PTCB-BRCT
RCF1-5-like_lid
AAA_19
Rad17
BRCT_2
AAA_30
AAA_5
AAA_18
Gp44_lid
nSTAND3
RuvB_N
RsgA_GTPase
Sigma54_activ_2
AAA_14
AAA_28
AAA_17
Zeta_toxin
AAA_assoc_2
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
131030431
NCBI-ProteinID:
XP_059075843
LinkDB
All DBs
Position
4:complement(436935228..437085459)
Genome browser
AA seq
972 aa
AA seq
DB search
MSDIRKWFMKQPHKNTVPEKERPKQTETPKQDIASEGANAGRKKVSKYFTTPNPDNTIKA
IPDEDFKPEKASAKRKKQKVDVDDTSEIKVPSPKKLHKDNTKETKEKSKTAYKKDDGISG
DYSDGPNLGSRGIGGNLSAKNGNENLPQHGGRGGVGRGGGGSNIGGRGRGGGRGPFGNFG
ERAAPPHKGEKEVPEGAENCLQGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTS
YLLADEDVGGRKSEKAKELGTPFLSEDALFDMIRKSKPTKSSGKENVQKKDQKDFKVAET
MSSIMPKIGEKGQINKDFGRKTSEKCLQPEVPDRKIIANVKGNTEIWTEKYRPKTSNDII
GNQSTVKQLHDWLAHWDEQHLNIENKGTKSKKRGSGSNSDISKKAVLLSGTPGIGKTTSA
RLISQMLGFTTIEVNASDNRGKADAKIERGIGGSTSNSIKELINNEALNFCHSNSSRRQK
FVLIMDEVDGMSGGDRGGVTDLISSIKMSKIPIICICNDRYNQKLKSLVNYCLALNFRKP
TKQQMAKRLHQIAELEGVQVDEIALEELGERVNGDMRMAINQLQYMSLSFSVLKYADMKA
RLQSNAKDEDVTPFTAVDKLLGYEGGRLKLDDRMNFCMTDPDLIPLIIQENYLNYKPSAA
SHDSDGTLRMDLIARAAESIADGDVVNVQIRRYRQWQHSQMGAFASCIIPAGFMHGQREV
LGKGDRRFNKLAGWKGKFLTWHKNERKSEDEMEIHSHLFLLFFVFLYREALRMDYLPAFM
LKLTKPLRTLPKEEGVQTVVKFMDEYSINQEDVDTIVDLCKFQGHPNPYDGVPPAVKSAL
AKAYKQHEQCHRVRAADLLPSVLYPGQKKTPKSKRVASLLTEVEDDFVLQNNSDNVEEEE
ELVDEEVSEVSAYNNGSLQLSLQENKPKGVEIQLDIKNNEVLRGKPSKANESKSHAEKEK
LTSGTKSVKRKR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacatacgcaaatggttcatgaaacaacctcacaaaaacactgtgcctgaaaag
gagagaccaaagcaaacagagactccaaaacaggacattgcctcagaaggagcaaatgca
ggaaggaagaaagtaagtaaatatttcaccacacccaaccctgataacactataaaagca
atcccagatgaggatttcaagccggagaaggcttcagcaaaaagaaagaaacagaaagtg
gacgtggatgacacatctgagataaaagttccatcccccaagaagcttcacaaagataac
acaaaagaaactaaggagaagagtaagactgcttataaaaaagatgatgggatttcagga
gattactcagatgggcctaatttagggagccgtggcattggtggtaatttgtctgcaaaa
aatggaaacgaaaatcttcctcagcatggcggcagaggtggagttggcagaggcggaggt
ggaagtaatattggaggtagaggccgaggaggtgggagaggtccttttggtaactttggg
gaaagagctgctcccccacataaaggtgaaaaggaggttccggaaggtgctgaaaactgc
ttgcagggtttgacctttgtaataagtgggactcttgatagtttagagagggaggaagca
gaagatctgattaagcgccatggtggcagggttactgggtcggtcagcaagaaaacgagt
tatttactggctgatgaagatgttggaggccgtaaatctgagaaagcaaaggagcttgga
acacctttcctttctgaagatgctctgtttgacatgatccgtaagtcaaaacctacaaag
tcatctggcaaggaaaatgtgcagaagaaagaccagaaagattttaaagttgctgagaca
atgagtagtattatgccaaaaattggggaaaaaggtcaaatcaacaaggattttggcagg
aaaacaagtgaaaaatgtttgcagcctgaggttccagacaggaaaataattgcaaatgtt
aaaggaaatacagaaatatggacagagaagtatcgaccaaagacttctaatgatataatt
gggaatcaatccactgtgaaacagttacatgattggctggcacattgggatgagcaacat
ctaaacattgagaataaaggaactaaaagcaaaaaacgtggcagtggtagcaatagtgac
atctcaaaaaaggcagtgctgttaagtgggacacctggtattgggaagactacttctgca
agattgataagtcagatgcttggtttcactaccattgaggttaatgctagtgacaatcgt
gggaaggccgatgctaagatagaaagaggcattggagggagcacatcaaattcaataaag
gagttaatcaacaatgaagctttgaatttttgccactcaaatagttcaaggcgtcagaaa
tttgttttaattatggatgaggttgacggcatgtctggaggagataggggaggagtaaca
gatcttatatccagcatcaaaatgagcaagatacccataatttgcatttgtaatgatcgc
tacaatcaaaaattgaaaagtcttgtcaattactgccttgctctgaattttaggaagcca
acaaagcaacagatggctaaaaggttgcatcaaattgcagaattggagggtgttcaggtt
gatgagatagcacttgaggaacttggtgagcgtgtcaatggagatatgcggatggcaata
aatcaactgcaatacatgagcctctcattttctgtccttaaatatgctgatatgaaagct
cgtttgcagagtaatgcaaaagatgaagatgttacaccatttacagctgtggacaagttg
cttggatatgaaggaggtaggctaaaacttgatgacagaatgaatttttgcatgacagat
ccagatctcattcctcttattattcaggagaactatttaaattataagccaagtgctgca
agtcatgattcagatggaacacttcgaatggacttaattgcccgtgcagcagagtctatt
gcagatggagatgtagtaaatgtacaaattcgtaggtatcgccagtggcagcattcacaa
atgggtgcctttgcatcatgtatcatccctgcaggttttatgcatggtcagagagaggtc
cttggaaaaggggatagaagattcaacaaacttgctggttggaagggcaaattccttact
tggcataaaaatgaaaggaaaagtgaggatgagatggaaatccattctcatttattcctc
ctattttttgtcttcttgtacagagaagctctacggatggactacctgccagctttcatg
ttgaaattaactaaacctctgcggacattgcctaaggaagagggagttcaaactgttgta
aagttcatggatgagtactctattaatcaagaagatgtagacacaatagtagatttatgc
aaattccagggtcatcccaatccttatgatggggtacctcctgcagtcaaatcagccttg
gcaaaagcatataaacaacatgagcagtgccatcgtgttcgggcagctgatctacttcca
tctgttctctatcctggtcaaaagaagacacctaagtcaaaacgagtcgcttctcttttg
acagaagttgaagatgattttgttttacagaacaacagtgataatgttgaagaagaggaa
gaacttgttgatgaagaagtctcagaagtttcagcctacaacaacggaagtctacagttg
agccttcaagaaaacaaaccaaaaggagtcgagatacaattagatataaagaataatgag
gtgttaagaggaaagccatccaaggcaaacgaatctaaatctcatgctgaaaaggaaaag
ttaacttctgggacaaaaagtgttaagaggaaaaggtaa
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