Cryptomeria japonica (Japanese cedar): 131031030
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Entry
131031030 CDS
T10556
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131031030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131031030
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131031030
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131031030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131031030
NCBI-ProteinID:
XP_057818020
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All DBs
Position
3:complement(158942653..158943614)
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AA seq
266 aa
AA seq
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MAEFQKRDSVFIKEVWAYNVEEEIEAIRSVVKEYPYVAMDTEFPGTVVKPTLKFRSKKDY
QYSNMMVNVNLLSLIQLGLTFFDKDGNLPDCGTGQPCAWQFNFREFDPAVEIHDPESISL
LTQSGIDFKKNNAIGIDAKGFARMLTLSGIFFNENVHWIAFHGVYDFGYMLKLLTCSPLP
PSGDQFFELMKFYFPSIYDVKYLIKYCDGLYGGLNRLAELLNVQRVGIAHQAGSDSLLTC
SVFMKLKQGFPETYMDRFANVVYGLG
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatttcagaagcgagattcagtttttattaaggaagtgtgggcttataatgtg
gaggaagaaattgaagcgatccgatcggtggtgaaggaatatccgtatgttgccatggat
acagagtttcccggaactgttgtgaaaccgaccctgaaatttagaagcaagaaagattat
cagtacagcaatatgatggtcaatgtaaatttgctttctctaatccaactcggcctgaca
tttttcgacaaagatggtaatctgcccgactgcggtacagggcagccctgcgcctggcag
ttcaatttcagggaatttgatccagcggtagaaatccatgaccctgagtccattagtctt
ctcacacaaagtggtattgatttcaagaaaaataatgcgataggtattgatgccaaaggg
tttgcaaggatgctgacattgtctggcattttcttcaatgagaatgttcactggattgca
tttcatggtgtttatgattttgggtatatgctgaagctccttacttgcagtccattgccg
cccagtggagaccaattttttgagcttatgaaattttacttcccaagtatttatgatgtg
aagtatttgattaagtactgtgatggcttgtatggagggcttaatagactggctgagttg
ctcaatgtgcagagagttgggattgcccatcaagcagggtctgacagcttgcttacctgc
tctgtttttatgaaattgaaacaggggtttcctgagacatatatggacagatttgcaaat
gtggtgtatggattgggttag
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