Cryptomeria japonica (Japanese cedar): 131031038
Help
Entry
131031038 CDS
T10556
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131031038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131031038
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131031038
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131031038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131031038
NCBI-ProteinID:
XP_057818034
LinkDB
All DBs
Position
3:complement(160129153..160130374)
Genome browser
AA seq
271 aa
AA seq
DB search
MVMVKRDSVCIREVWADNLDEEFELIREVVDQYPYVAMDTEFPGVVIRPKGRFNTREEYH
YHTLKANVDNLKLIQLGFTFSDEEGNLPDCGTGRHCVWQFNLREFNPLQDIHAPDSIELL
RESGIDFRKNNKMGIDSNRFAELLMSSGIVLNENVRWVAFHSAYDFGYLIKLLICNKLPY
TQEGFFSLMRLYFPSVYDVKHMIKFYDGLYGGLNRVAELLKVERIGTCHQAGSDSLLTCS
VFMKLKEGFPQRSMDKYTNVLYGLGLDSCSY
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggttatggtgaagagggattcagtttgcataagggaggtgtgggcagataacctggat
gaagaatttgagctgatcagagaagtggtagatcaatacccatatgttgccatggatacg
gagttccctggggttgtgataaggccaaaggggagattcaataccagagaagagtaccat
taccacaccttgaaagccaatgtggacaacctcaaactgatccagttgggcttcactttc
tcagatgaggaaggaaatctgccagactgtggcacaggtcgccactgtgtttggcaattc
aatctcagggaatttaacccccttcaagacatccatgcccctgattcaatcgagctcctg
agagagagtggtattgatttcaggaaaaataacaagatgggtattgattcaaatcgtttt
gctgagcttctcatgtcctctggcatagttttgaatgagaatgtcagatgggttgctttt
cacagtgcttatgattttgggtacctgataaaacttctgatctgcaacaagctgccctat
acccaagaggggtttttcagtctgatgagattgtacttcccaagtgtttatgatgtgaag
catatgatcaagttctatgatggactgtatggaggtcttaacagagttgcggagctgctt
aaagtagagagaattgggacatgccatcaagcagggtctgatagcctgcttacttgctct
gttttcatgaaattgaaagaggggtttccccagagatccatggacaagtacacaaatgtc
ttgtatggattggggctggatagctgcagctattga
DBGET
integrated database retrieval system
