Cryptomeria japonica (Japanese cedar): 131031117
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Entry
131031117 CDS
T10556
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131031117
Transcription machinery [BR:
cjf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
131031117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
GerE
HTH_11
HTH_28
Motif
Other DBs
NCBI-GeneID:
131031117
NCBI-ProteinID:
XP_057818135
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Position
7:complement(555222708..555229472)
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AA seq
657 aa
AA seq
DB search
MGGVTISTAGNQAQFGITAVKTGILSDRLASSGRSFSLHHTLYRNLCNQKTGLIAKAEHR
GQKFQSSPIFTVSNCICTIENQERLSSKTQDGKKKTRTSSRVKNATLNKGSTCTIPSADI
DYGKAAVTLEHIYNDSPSVSDSNFETSDKIGKTKSKRRKTKSLNSSAANYKESRAFLSDS
NIETVDKIGKSKAKRSKTKSLDLSADNNNESQASVSGLNFETSDRIRKAGTKRKRTKGLI
LNAGNYETSPISSVTDAISNSIKPNKVGMVPATKPKFKSTFNNETACSARSTKERKKRLS
LGLRIASTKAKLDRMLGKDQTASQRNKKVNITNGDPDFWCEEVDALIKSYSISPMHLNWN
RLQVRELLSPSEHIWLAKLMKPMKFYIQTKGSLKKVFRREPREQEIAAALKIPLRTFKRH
IEAGRAARNKLIQHNLRLVLFEIYKYNINGSRLGFEDACLEGTKGLMIGVDRFEPEKGFR
LSTYAMYWIRHAILRAMTLSNIVHIPFVISGLKLERQRTILDLLLKLGRAPTAEEIRAQM
GLDRERYNDVVRACKKSLSYDDCDRDNSVPYQHNESYSTIKPQALLRLGLDDVLDSLKPK
ESLVIRQRFGLDGRGKRSLGEIARNLNISREMVRKHEVKAMLKLKHPSRVEYIRGYL
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagtgactatatccactgcagggaaccaagctcaatttggcattacagctgtc
aaaactggcattctttctgatcgtcttgcttcatcgggcagaagcttctccttgcaccat
actctgtacagaaatctttgcaaccagaaaacaggtttgattgctaaggcagagcatcga
ggtcaaaaattccaaagctccccaatatttactgtatcgaattgtatatgtaccatagaa
aatcaggaaagattatcatcaaaaacacaggatggaaaaaagaagaccaggacatcatcc
cgagtaaaaaatgctaccttaaacaagggttccacttgcacaattccaagtgcagacatt
gattatgggaaagctgcagtgacacttgaacatatttataatgacagtccctccgtatca
gattccaactttgagacttcagacaagataggaaaaactaaatctaaaaggaggaagact
aaaagcttgaattcaagtgcagctaattataaggaaagtcgggcctttctttcagattcc
aacattgagactgtggacaagattggaaaatctaaagctaagaggagtaagactaaaagc
ttggatttaagtgcagataataataatgaaagtcaagcctctgtatcaggcttgaatttt
gaaacatcagacaggattagaaaagctggaaccaagaggaaaaggactaagggtctaatt
ttaaatgcaggtaattatgaaacatcacccatatcctctgttacagatgcaatttccaat
tctatcaaaccaaataaagttggaatggttcctgctactaagccaaaatttaaaagcaca
ttcaacaatgaaactgcttgctcagccagaagcactaaagaaagaaagaaacggttaagc
ttgggtttgagaattgcttcaacaaaagcaaagttggataggatgctaggaaaagatcaa
actgctagtcagagaaataaaaaagtaaatattacaaatggagatcccgatttctggtgt
gaagaagttgatgccctgattaagtcatacagcatctccccaatgcatttgaactggaat
cgtctgcaagttcgggaactcctttctccttcagagcacatttggcttgcaaaactcatg
aagcccatgaagttttatatccaaacaaaaggaagccttaaaaaagtttttagaagagag
ccaagagaacaggaaatagccgcagcattgaagatacctcttcgcacatttaagagacat
atagaagcaggacgagctgcaagaaacaagctgattcagcataacttgaggttggtgctc
tttgagatttacaagtacaacattaatgggtctcgtttaggctttgaggatgcctgccta
gaagggacgaagggtttgatgattggagtggacagatttgaacctgagaaaggttttaga
ttgtccacttatgcaatgtattggattcggcatgccattctgcgggccatgacactttct
aacattgttcacataccttttgtaatttcagggctcaaacttgaaagacaaagaacaatt
ctagatttattgctgaaacttgggcgggctcctactgctgaagaaataagggcacaaatg
ggcttggacagagaaagatataatgatgttgtccgggcatgcaagaaatctctgtcttat
gatgattgtgatcgagataacagtgtaccatatcaacacaatgagtcgtattcaacaata
aaaccacaggcacttctcagacttggcttggatgatgttcttgattccttgaagcccaag
gagagcctagttatcagacaaaggtttggactagatggaagaggaaagagatctctcggg
gagattgcaagaaatctcaacatttcaagagaaatggtccgcaagcatgaagtgaaagca
atgttgaaactcaagcatccatcacgagttgaatacattcgtggatacttgtag
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