Cryptomeria japonica (Japanese cedar): 131032097
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Entry
131032097 CDS
T10556
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131032097
Spliceosome [BR:
cjf03041
]
Complex C
Other components
Step II factors
131032097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
AAA_30
UvrD-helicase
Flavi_DEAD
ABC_tran
SLFN-g3_helicase
PhoH
ATPase_2
AAA_14
T2SSE
NACHT
AAA_16
NB-ARC
TsaE
Sigma54_activat
DAP3
AAA_23
Cas3-like_C_2
AAA_18
AAA_7
Spond_N
AAA_29
Motif
Other DBs
NCBI-GeneID:
131032097
NCBI-ProteinID:
XP_057818999
LinkDB
All DBs
Position
4:complement(718625700..718813218)
Genome browser
AA seq
706 aa
AA seq
DB search
MEKIQLPINEYENEILKAVTHNSIVVIIGETGSGKTTQLSQIMHRHGFTKSGRVGITQPR
RVAAVSVSRRVASEMGVRIGEEVGYSIRFEDRTSDRTCIKYLTDGCLLRECLSDPELRQY
AVIILDEAHERSLNTDILLGLMKKLVRRRSQDLKVIITSATLDGDKFSSFFFKCPVLNIP
GKLFPVEILYSMERPASYRESALQTAIDLHTQQPPGDILLFMTGQDDIDKTVSKLEERIR
SLDEGSCMDAIILPLHGSLPPEMQVRVFMQVPPNCRRIIVATNIAETSLTVDGVVYVIDP
GFVKQRQYNPGTGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPFSVYEHELLEATI
PEIQRSSLASAVLHLKSLDLPDIDVLKFDFLDQPSRESLEDALKQLYLIDAIDDDGLITK
IGRQMAELPLEPSLARALIAANDLECLSQCLTVAAMLSCENVFTPTSSKGASKKRERVDL
NLPDGSGMGDHIQLLEIYEEWHQNHYDVEWCKNHGLQVRSMMFAKDVRQQLSSLMYKITK
ESLDVMTKESFREKRIMIRKLRKALCVGFANRLAQRMERHNGYRTLCYKAQLVQVHPTAC
PLEVDDDGLYPEYVLYNELLVTSRPYIRNLCSVEASWVKPIWAKLQHFDIGKLSGRALST
EELNIPTQEVTNCSATVTPKLSENRENIIQSARERFLARKQLKVKK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaatccagttgccgatcaacgaatacgaaaatgaaatattgaaggccgttact
cacaattcaattgttgttattattggagaaaccggttcaggcaaaactacgcagctctca
cagattatgcacaggcatggcttcactaaatctggaagggtgggcatcacgcaacccagg
cgcgttgcagctgtttcagtctccagacgagtggcatctgagatgggggttcgaattgga
gaagaagtgggttattctatccggtttgaggacagaacctcagacaggacctgcataaag
tacctgacagacggctgtctccttcgtgaatgtttgtctgatccagagctaagacagtat
gcggttattatattggatgaagctcatgagaggagtttgaacactgatatattgttagga
ttgatgaaaaagctagtgagaaggcgatctcaagatttaaaggttataattacatctgca
acattggatggtgacaaattttcttcttttttcttcaaatgtcctgttctgaatattcct
ggcaaattattccctgttgaaatattatatagcatggagcgacctgcaagttaccgtgag
tctgctttacaaacggctatagatttacatacccaacaacctccaggtgacatacttttg
tttatgactggacaggatgatatagacaaaaccgtttcaaaacttgaggaacggattcgg
agtctagatgaaggttcttgtatggatgccataattctacctcttcatggctcgcttcca
ccagaaatgcaggttcgagtgtttatgcaagtgcctccaaattgtagacgtattattgtt
gcaactaatattgcagaaacatccctcactgtagatggcgttgtatatgtcattgatcca
ggctttgtgaagcaacgacaatacaatcctgggactggaatgtactctctcgatgtggta
cagattagtcgagtgcaagctgaccaacgggcaggtagagctggaaggacacgtcctggg
aagtgttatagactctatccattctctgtgtatgagcacgaattgcttgaagccaccatt
cctgaaattcaacgttcatcacttgcttctgcagtgcttcacctcaagtcactagatctt
ccagatattgatgttctcaagtttgactttcttgatcaaccatcacgtgagtcattggag
gatgccttaaagcagttgtacctcattgatgcaattgatgacgatggtttaataaccaaa
attggaaggcaaatggcagagctccctctagaaccttcacttgcaagggccttgattgca
gcaaatgacttggaatgtttatcccaatgtctaacagttgcagcaatgttgtcatgtgaa
aatgtgtttactcctacctccagtaagggtgcctctaaaaagagagagcgtgtggactta
aacctacctgatggtagtggtatgggtgaccatattcagctgcttgaaatttatgaagaa
tggcaccaaaatcattatgatgttgaatggtgcaaaaatcatggtttgcaggtgagatct
atgatgtttgcaaaagatgtcagacaacaattgtcatctctaatgtacaagataacaaag
gaatctctcgatgtcatgacaaaagaaagttttcgagaaaagaggatcatgattaggaaa
ttgaggaaagctttatgtgttggttttgcaaaccgactggcacaacgaatggagcggcac
aatggttacagaaccttgtgctacaaggcacagcttgtgcaggtgcatccaactgcttgt
ccactagaggttgatgatgatgggctttacccagaatatgttctttataatgagttactt
gtaacatctcgtccatatatacgtaatttatgttctgttgaagcatcgtgggtcaagcca
atttgggcaaagctacaacattttgatattggtaaactcagtggaagggctttgtctact
gaagaattgaatattccaacccaagaggtaacaaactgcagtgcaactgttaccccaaag
ctctcagagaatcgtgaaaacattatccagtcagctcgggagaggttccttgctcgaaag
caattaaaggtgaagaaatag
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