Cryptomeria japonica (Japanese cedar): 131032370
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Entry
131032370 CDS
T10556
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04142
Lysosome biogenesis
cjf04145
Phagocytosis
cjf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
131032370
04142 Lysosome biogenesis
131032370
04148 Efferocytosis
131032370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131032370
Membrane trafficking [BR:
cjf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131032370
Hops complex
131032370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
Nup54_57_C
zf-RING_11
zf_RING_Vps8_fungal
Beta-prop_VPS8
zf-RING_Vps41
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
131032370
NCBI-ProteinID:
XP_057819301
LinkDB
All DBs
Position
8:complement(674620161..674871391)
Genome browser
AA seq
1026 aa
AA seq
DB search
MLEDWASLHSSSESGSHTINEYAEAYGISGGQKNMESHIFSVDTLERHASKSHGVITCMS
AGNNAILVGTNKGWLVRYDFGGGDNYELDLSISRTGDQTVHRVFVDPGGKHCLAIVLSSG
GAETYYTYAKWRKPRILSKLKGLVINAVAWNRQQISEASTRDIIIGTMGGQLYEVVVEEK
DKKEKHLKLLFELIELKEPFVSLQMETNATGATTRYYVMASTPTRLYTFIGTGSLDVVFA
AYANRSIHFTELPGEMPSSELHFFVKQRQADFAWLAGAGIYYGNLNLGAPQSGSSNGDDN
FVENKALVEYSKLEKDREGIKPHSLALSEFHFLLLFENKVKVVNKVSQKLIEELQFDREF
DSSSREILGLCSDVTAGVFYAYDENSIFEISVHDEGQDMWQVYLDMKEYAAALEHCRNTF
QRDQVYSVQAEAAFSTKDFMRAAFFYAKTNYIMSFEEVALKFVAAGEQDALRTFLLRKLD
NLGREDRSQITMISTWATELYLDKINRLLLDDDKQGGETSSSSNEINTKYRDTLREFRDF
LSDCKDVLDEATTVKLIGSYGRVDELVFFASLKEQHETVIHHYIQQGETRKALEVLQKPN
VSPELQYKFAPDLIMLDPYETVESWMAASNLNPRRLIPALMRYSSEPHTKDEAHEAIKYL
EFCVQRLQNEDPAVHNLLLSLYTKQKDESALLRFLQCKYGKGRSGKPDIFYDPKYALRLC
LKEGRMRACVYIYSMLGMHEAAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVI
EQERGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNKQIEK
LKQEMNDATHGADSIRQDISALAQRYAVVDRDEECGVCGRKILTSRSGLGVARAFTSPMA
PFYVFPCEHAFHAQCLIWHVTKHTDATEAERILDLQRRLSLAVNSGTTLNLERTSSIADE
ETPVSTRSPTDQIRAQLDDAVAGECPFCGELMIKEVSLRFIMPEETEHVMSWDIKGGTLS
REYGLA
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgttggaagattgggcttctttgcattcttcttcagaaagtggatctcataccatcaat
gagtatgcggaggcttatggtatttctggaggacagaagaatatggagagccatattttc
tcagtagacacacttgaacgacatgcatccaagagtcatggagttataacatgcatgtca
gcaggaaataatgccatacttgttggaactaataagggatggctggttcgatatgatttt
ggaggtggagacaattatgagcttgatctctccattagccgaactggggatcaaactgta
catagagtctttgtggatcctggtgggaagcattgtttggctattgtgcttagtagcgga
ggagctgaaacatattacacatatgctaaatggagaaagccccgtattctgagcaaattg
aagggtcttgttataaatgctgtagcttggaataggcagcagatttcagaagcatcaaca
cgagatattattattgggacaatgggaggtcaactctatgaggttgtagttgaagaaaag
gacaagaaggagaaacacctcaagctgctatttgaattgattgagttgaaagagccgttt
gtgagtttgcagatggaaacaaatgctacaggtgctacaactcgctattatgtaatggct
tctactccaaccaggctttatacgttcattggcacaggatctctggatgttgtatttgct
gcatatgccaatcgtagtattcattttacagaacttcctggtgaaatgccaagcagtgaa
cttcatttctttgtcaagcaacgacaggccgactttgcttggcttgctggagcaggcata
tactatggtaatctgaatcttggagcaccacaaagcggctcaagcaatggagatgacaac
tttgtggaaaacaaggcccttgtagagtattcaaaattagaaaaagaccgagaaggaata
aaaccacactcacttgcattatcagagttccatttcttgttgctttttgaaaataaagtt
aaggttgttaataaagtgagccaaaaattgattgaggagctgcagtttgaccgagaattt
gattcaagttctagagaaattcttggactttgcagtgatgttacggctggtgtattttat
gcatatgatgaaaactctatttttgagatatctgtacatgatgaaggccaagatatgtgg
caagtttatttagacatgaaggaatatgctgctgctttagaacactgcaggaacacattt
cagagagatcaagtatactcagttcaggctgaggctgccttctctactaaggatttcatg
agagcagcttttttttatgcaaagacaaattatatcatgtcatttgaggaagttgcatta
aaatttgttgctgcaggtgaacaggatgcactgagaacctttttgctaaggaaattagac
aatctcggccgtgaggaccgttctcaaataacaatgatctctacatgggcaactgagttg
tatcttgacaagattaatcgtcttcttttggatgatgacaaacaaggtggtgaaacatcg
tcttcttcaaatgaaattaacaccaagtaccgggatacacttcgggagtttagagatttt
cttagtgattgtaaagatgttctcgacgaagcaacaactgtcaaattgatagggagctat
ggaagggtagacgaacttgtattttttgctagtcttaaggagcaacatgagactgtaatc
caccattacattcagcaaggagagactaggaaagctttggaagtattgcaaaaaccaaat
gtttctccagagttgcagtacaagtttgccccagatttaatcatgctagacccatatgaa
actgttgagtcatggatggctgcaagcaatttgaacccaagaagattgattcctgcattg
atgcgttattccagtgaaccccatacaaaggacgaggcacatgaggctatcaagtatttg
gaattctgtgtccagcggctccaaaatgaagatcctgctgtgcataacttgttactttcc
ttgtacacaaaacagaaagatgagagtgcactcttacgattccttcaatgcaagtatgga
aaaggtcgatctggcaaaccagatatattttatgatcctaagtatgctttacgcctttgt
ctgaaagagggacgaatgcgtgcttgtgtttacatctatagcatgctgggcatgcatgaa
gcagctgttgctctggcattacaggtagacccagagctagcaatggcagaggcagacaaa
gttgaggatgatgaagacctgcgaaaaaaactttggcttatggttgccaagcatgtaatt
gagcaggaaagggggacaaaacgagagaacattcgaaaggcaatagcttttctcaaggaa
acagatggtcttttaaaaattgaagatattttacctttctttccagattttgctctgatt
gatgatttcaaggaagccatatgttcatccctagaagactataataagcagattgagaaa
ctgaagcaggagatgaatgatgcaactcacggagcagacagcatcagacaagacatcagt
gctttggcacaaagatatgcagttgttgatcgtgatgaagaatgtggggtttgtggacgt
aaaatattgacttcaagaagtggacttggagtggctagggcttttacatcacccatggcc
ccattttatgtatttccttgtgaacatgcttttcatgcacaatgtcttatttggcatgtc
acaaagcacacagatgcaactgaggcagagcgcatacttgatttgcagcggagactgagt
ttagctgtgaactcagggacaaccctcaatttagaaagaacgtcaagcattgcagatgaa
gaaacaccagtcagcaccagatcacccacagatcagattcgagcacagcttgatgatgct
gtggctggggaatgtccattttgtggggagttgatgataaaggaggtctccttgcgtttt
attatgcccgaggaaacagagcatgtaatgtcatgggatataaaaggtggtacgttgtca
cgagagtatggtttagcataa
DBGET
integrated database retrieval system
