KEGG   Cryptomeria japonica (Japanese cedar): 131032472
Entry
131032472         CDS       T10556                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131032472
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjf03021]
    131032472
Enzymes [BR:cjf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     131032472
Transcription machinery [BR:cjf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     131032472
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_4 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 131032472
NCBI-ProteinID: XP_057819433
LinkDB
Position
3:complement(730681483..730891398)
AA seq 1307 aa
MSSEMETEAVTERMDIIDVSDESEDPNARNDDVHMISEQLQDTATQMDMTDIREAHAIDE
DVPYRIESADGHTKSNAIESMLYMVENADSHPDNWDLGDILKEIEDSGRNMGIDIAEKVE
LRSNKDEVTLEEETEESEDGQGIPNEFENALSDKELSALCKDASKAFFDEWGLVSHQINS
FNHFMSHGLQKVFDNFGKFDVEPDYTQRRRDGLWYRASISFGKVTVEQPSYCSKEGKKLL
LKPAEARLRNMTYASPIYLEITTKVYIQEGKKADDNTKSSSSSLMKDAKNMAVISEEHKR
VLIGRIPIMVKSNLCYLSSLTSKELLKEGVCSFDVGGYFIIKGTEKVFIAQEERCTSRLW
VSNSPIWMAIYTPCTSGFFMNKNKVIVKVLETSKDDKWCAGRKVISVYFFAITVPVVLMF
YALGVESDFEMMQMIGIEFSECEARELLLSSIYKAEAELKCFRRKEKVWAYINDQLKNCK
FPKDQDAEEALQAYLFPHILGCKQKAMFLGYIVNRLLSSYFGQRHVECKDDYKNKRLELA
GELLGRELHGLVRHFRNRLAKGIQREISVRGNMKSMDIYADASIITNGLSRAFSTGNWSH
PHKFNVKCTGVVANLKSTNPLQNLSEMRRLRLRVQYAAKLGDARYPNPSYWGRVCFISTP
DGENCGLVKNLAVTCVVSLHSAQEPILDILKESGIIVIDNVSSSNSKGATNIFINGDWVG
IHHDPDSLVKKLRNLRRKQYIHPHVEIKKDDKQNEIRIFSDAGRLLRPLLIVKNQSLCIS
KQQVEKFKKSCNPFKYLMKKAIVEILGVEEEEDAQIACGIDILLMAEKNPDYQQFTHCEL
DPSFLLSLNASIIPFANRNLATRTLLQSEKHSRQAIGYYATNSRTRCDTTSHQLFYPQRP
LFKTMSSECIRKVELYNGQNAVVAVNVHYGYNQEDSLVINHASIDRGLFRTIHFHTFTSE
TDHDHSDSKSSSRPEVDFGKPNTEKLRVDKLDEDGLPYIASNLYSGDILIGKVDPQSSDS
NFSLKLKHTEKGRVDQVVMAINDDGRKFARVRLREVRCPSLGDKFSSMHGQKGVVGFIEE
QENMPFTKEGIVPDLIINPHAFPSRQTPGQLFESALSKVISSSGVVRDATPFKSMTIEYI
TEQLHRCGYEQWGKEQMYNGRTGSKMRSKIFIGPTYYQRLVHMAEDKLKYRNQGPVHPLT
RQPVADRKRHGGVKFGEMERDCMLAHGATANILERLFYLSDFSRMQICSQCHMVATVVLR
EGIRGPYCPFCKTAKHVVKVDVPYACKLLYQELFCMGICLKFSTVLC
NT seq 3924 nt   +upstreamnt  +downstreamnt
atgagcagtgaaatggaaactgaagctgttactgaaaggatggatattatagatgtatca
gatgaatctgaagaccctaatgccaggaatgatgatgtgcatatgatatccgagcagtta
caagacactgcaacacagatggacatgacagacataagagaggcccatgcaattgatgaa
gatgtgccatatagaattgagagtgcagatggccatacaaaatccaatgcaattgagagt
atgctgtacatggtggagaatgcagatagtcatccagacaattgggatttgggagacatt
ctcaaagaaatagaggactctggcaggaacatgggtatagatattgctgagaaagtagaa
ttaagaagcaacaaagatgaagtaacacttgaagaagaaacagaagaaagtgaagatgga
caaggtatacccaatgaatttgaaaatgcattgtctgataaagaattaagtgccctctgt
aaggatgcttcaaaggcattttttgatgaatggggactggttagccatcagataaattca
ttcaatcatttcatgagccatgggttgcagaaagtgtttgataattttggaaagtttgat
gtagaacctgattatacacaaaggagacgggatgggttgtggtatcgggcatccatttct
ttcggtaaggtcactgtggagcagccttcctattgcagcaaggaaggcaagaaactgctg
ctaaaacctgccgaggctcgtttgcggaacatgacatatgcatcccctatatatctagaa
attacaacaaaagtttacatccaggaggggaaaaaagcagatgacaatacaaagagtagt
tcaagctcactaatgaaagatgcgaagaatatggcagttattagtgaggaacataaaaga
gtgttaattggccgaattcctatcatggtgaagtcaaatctttgctacttgagcagtcta
actagtaaagagctacttaaagagggtgtttgctcgtttgatgttggagggtacttcatt
ataaaagggactgaaaaggtctttattgcacaagaagaacggtgcacaagtcgactttgg
gtatcaaatagtccaatctggatggcaatttacacaccttgcacaagtggatttttcatg
aacaagaataaagttattgtcaaagtcctcgagacatcaaaagatgacaaatggtgtgca
ggaagaaaagtgatttctgtttatttctttgcaattacagttccagttgtgcttatgttt
tatgctctgggtgtagaatcagattttgagatgatgcaaatgataggaattgaattcagt
gagtgtgaggcaagagagttattgttgtcatcaatttataaggcagaggcagagttaaaa
tgttttcgaagaaaagaaaaagtttgggcctatattaatgaccaacttaagaattgtaaa
tttccaaaagatcaagatgctgaagaggctcttcaggcatacctttttccacatatattg
ggatgtaaacaaaaagcaatgtttttaggatacattgtcaatcgtcttctatcatcttat
tttggccagagacatgtagaatgtaaagatgactacaagaacaaaaggctggaactagca
ggtgagctgcttggtcgtgaactacacggattggttagacattttcggaatagattggcc
aaaggaattcagagagaaatctcagtgcgtgggaatatgaagtcaatggatatttatgct
gatgcttccattatcacaaatggtctttcaagagcattttctacaggaaattggtctcac
cctcataagttcaatgtcaaatgcacaggtgttgtagcaaaccttaagtcaacaaatcca
ttgcagaatctctctgagatgcgtagattacggcttagggttcaatatgctgccaagcta
ggggatgcaagatatccaaatccttcctactggggacgagtttgcttcatatccacacct
gatggtgaaaattgtggactagttaagaatttggcagttacatgtgttgtcagcttacat
tctgcccaagaacctatccttgatatattgaaggaatctggaattatagtgattgataat
gtttcctcatcaaattccaaaggtgccacaaacattttcatcaatggagattgggtagga
atccatcatgatcctgactctcttgtaaagaaattacgaaatcttcgtcgcaagcagtat
attcatccacatgttgaaattaaaaaagatgacaagcaaaatgagatccgtattttttct
gatgcaggaagacttttgaggcctcttttaattgtgaaaaatcaaagcctatgcatatct
aaacagcaagttgaaaaatttaagaaaagttgcaaccctttcaagtatctcatgaaaaag
gccattgtggaaatattaggagttgaagaggaagaagatgctcaaattgcttgtgggatt
gacattttactgatggctgaaaagaacccagactatcagcagtttactcattgtgagttg
gatccatcttttttattaagtctgaatgctagcatcatcccctttgccaaccgcaatctt
gcaactagaacacttctccaatcagaaaaacactcaaggcaagcaataggatattatgca
acaaattcccgtacaaggtgtgacacaacatctcatcaattattttatcctcaaagacct
ttgtttaagactatgtcttctgagtgcatcaggaaggtggagctctataatggtcaaaat
gctgttgttgcagtcaatgttcattatggatacaaccaggaagactcattggttataaat
catgcttcaatagatcgtgggctattccgaaccattcattttcacacattcacatcagag
acagaccatgatcacagtgactctaagagttcatctaggccagaagtagattttggaaag
ccaaacacagaaaagctcagagtagataagcttgatgaggatggactaccatatattgcc
tcaaacctttatagtggtgacattttgattggaaaggtggatccacagtcatctgattca
aatttcagcctcaagttgaaacatacagaaaaagggagggttgatcaagttgtaatggca
atcaatgatgatggaagaaaatttgcgagggtaagattaagagaagtaagatgtccatca
cttggagataagttttccagcatgcatggtcaaaaaggagttgtggggtttatagaagag
caagaaaatatgcctttcacaaaagaaggcattgttccagatcttatcatcaatccacat
gcttttccatctagacaaactccagggcaactttttgaatctgccctttcaaaagtgatt
tcttcaagtggtgttgttcgtgatgctacaccttttaaatctatgacaattgagtatatc
actgaacagcttcacaggtgtggttacgaacagtggggtaaagaacagatgtataatgga
cggacaggaagtaaaatgcgatcaaagattttcattggtcccacatactaccagaggctt
gtacatatggcagaagacaaattaaaatatcggaatcaaggccccgtgcaccctttaact
cgacagcctgttgcagaccgaaaacgacatggaggtgttaaatttggagagatggagcgt
gattgcatgctagcacatggggcaactgccaatattttggaaagactattttatctaagt
gatttctctagaatgcaaatctgtagccagtgtcacatggttgcaacagtggttcttaga
gagggcataagaggaccatactgtcctttctgtaaaactgcaaaacatgtcgtaaaagta
gatgttccttatgcctgcaaattgctttatcaggaattgttctgtatgggtatatgtcta
aagttttcaactgtattgtgttga

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