KEGG   Cryptomeria japonica (Japanese cedar): 131032477
Entry
131032477         CDS       T10556                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2 isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131032477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjf03021]
    131032477
Enzymes [BR:cjf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     131032477
Transcription machinery [BR:cjf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     131032477
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 131032477
NCBI-ProteinID: XP_057819441
LinkDB
Position
3:complement(730069486..730234086)
AA seq 1281 aa
MSRANEIELSEKMDIIEISDESDDSASNNNDIATIAEEIEDSATDRDISKVANGCEIDED
VLYRAEKADDDPFKLGLGDAAKEIEDLFTSMDIDNAGEVEEVPSDIDLTTVAEEIESSDD
EPDVTKGSDNGLSDTELCTFVRDTTKAFFDEYGLVSHQINSFNDFMTHGLQKVFDNVGEI
EVESEHNPQKRTLDVRWNRASISFGRVTVEKPSYCNKEGKLLPLKPAEARLRNMTYSSPV
HVEMTTKLYFQETNDKSKSSSSSFTKNAEVQKKTVPVGRIPIMVKSQLCYLSSLNSKDLL
KEADCMFDVGGYFIIKGHEKVFIAQEERCTNRIWISSTPSWMAIYTPHSSGFTWKKNRVI
VKVMKTSKDDKWFAGREVITVSFSSITVPVVLMFYALGVESDFEMMQMIDNALSDSKMSE
ILMSSIYKAEAELKDFRKKDKVWEYINDQLKKSKFSKSQDIEEVLKAHVFPYIVGYKQKA
MFLGYMVNCLLSAYFGKRHVENKDDYKNKRLELAGELLGRELQGLVRHFCNRLRKGIQRE
LSVRGNLESMDIYNDASIITNGLVRAFSTGNWSHPHKFNIKCTGVVANLKSTNPLQTLSE
MRRMRLRVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTCLVSLNTSEKPV
LDALKQYGIIRVDQLSLSDSKDATKVFVNGEWVGIHHNSDSLVKKLKDLRRKQRIHPQVE
IKNDDRQNEIRIFTDAGRVLRPLLIVKNKRLCIFRQQFENFKKSCNPFKYLMKRGIIEIL
GVEEEEDSQIACGINILRMAEKNTDYVQFTHCELDPSFLLSLNASLIPFANRNLATRTLF
QSEKHSRQAIGYYTTNSRTRCDTSSHQLFYPQKTLFKTMSSDCLKKVELYNGQNAIVAVN
VHYGYNQEDSLVLNHASIDRGLFRTMHFHTFTSETDHDDSESKNSSRIGVDFGKPSTENL
RVDKLDDDGLPYIGSDLYSGDVLIGKVSSQPSDANFSLKLKHTERGRVDQVIMANNDDGR
RFARVRLREARTPSLGDKFSSMHGQKGVIGFIEEQENMPFTIEGIVPDLIINPHAFPSRQ
TPGQLFECALSKIIASSGIVGDATPFSPITIESITEQLHRYGYEQWGKEQMYNGRTGYKL
RSKIFIGPTYYQRLIHMSEDKLKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAH
GATANLLERLFYLSDFSSMHICSQCHMVATVILKEGIRGPYCPFCKTAKYAVKVNVPYAC
KLLYQELFSMGICLKFLTELC
NT seq 3846 nt   +upstreamnt  +downstreamnt
atgagccgtgcaaatgaaattgaactttctgaaaagatggatataatagaaatttcagac
gaatccgatgattctgccagcaataataatgatatagcaactatagctgaggaaatagag
gactctgcaacggatagggacatatcgaaagtagccaatggctgtgaaattgatgaggat
gtcctgtatagagcagagaaagcagatgatgatccgttcaagttgggtctgggagatgct
gcaaaagaaatagaggatctcttcacaagcatggacatagataatgcaggggaagtggaa
gaagtaccaagtgacatagacttaacaacagttgcagaagaaatagaaagcagtgatgat
gaaccagatgtaaccaagggatctgacaatggattgtcagatacagaactatgtactttc
gtcagggatactaccaaagcattctttgatgaatatggactggtaagccatcagataaat
tctttcaatgattttatgactcatgggctgcaaaaagtgtttgataatgttggagagatt
gaagtagaatctgaacataatccacaaaaaaggacactggatgtgagatggaatcgggca
tcaatttcttttgggagggtcactgtggagaaaccttcctattgtaacaaggaaggaaag
ctactgccactaaaacctgcagaggcacgtcttcgaaacatgacatattcatcccctgtc
catgtagaaatgacaacaaaactttatttccaggaaacaaatgacaagtcaaagagcagt
tcaagttcattcacgaaaaatgcagaagtgcaaaagaaaacagttccagttggccgaatt
cctatcatggtgaaatcacaactttgctacttaagcagtctaaactctaaagacttgctt
aaagaggctgattgtatgtttgatgttggagggtattttattataaaagggcacgaaaag
gtttttattgcacaagaggaacggtgtactaatcgtatttggatatcaagtactccaagc
tggatggcaatatacacacctcattcaagtggttttacctggaaaaagaacagagttatt
gtcaaagtgatgaagacatccaaagatgacaaatggtttgctggaagagaagtgattact
gttagtttttcatctattacagttccagttgttcttatgttttatgccctgggtgtggaa
tcagattttgaaatgatgcaaatgatagacaatgcattgagtgattctaagatgagtgag
atattgatgtcatcaatttataaggctgaggcagagctaaaagattttcgaaaaaaagat
aaagtttgggaatatattaatgaccagctcaagaaaagcaaattttcaaaaagtcaagac
attgaagaggttcttaaggcacacgtttttccatatatagtgggatataaacaaaaagcc
atgtttttaggatacatggtcaattgtcttctatcagcttattttggtaaaagacatgtt
gaaaacaaagatgactataaaaacaagagacttgaactggcaggtgagctactgggtcgt
gaattacagggattggttagacatttctgtaatagactgagaaaaggaattcaaagggaa
ctctcagtacgtgggaatcttgaatcaatggatatatacaatgatgcttcaattatcaca
aatggccttgtgagagcattttctacaggcaattggtctcatcctcacaaattcaatatt
aaatgcacaggagttgttgcaaatctcaagtcaacaaatccattacagactctatctgag
atgcgtagaatgcgactgagggttcaatatgctgcaaagctaggtgatgcaagatacccg
aatccttcctactggggaagagtttgcttcatctctacaccagatggtgaaaattgtgga
ctagtgaagaatttggctgtgacatgccttgtcagtttgaatacaagtgaaaaacctgtt
cttgatgcattaaagcaatatggaatcatacgagtggatcaactttcattatcagattcg
aaagatgcaacaaaagtttttgtgaatggagaatgggtggggattcatcacaattccgat
tctcttgtaaagaagttgaaagatcttcgtaggaagcagcgtatccaccctcaagttgaa
attaaaaatgacgacaggcagaatgagatccgtattttcactgatgcaggaagagttttg
agaccacttcttatagtgaaaaataaaaggttatgcatattcagacagcaatttgaaaat
tttaagaagagttgcaaccctttcaagtatcttatgaaaaggggcatcattgaaatatta
ggtgttgaagaagaagaagactctcaaatagcttgtgggattaatattttaaggatggct
gaaaagaacacagattatgtgcaatttactcactgtgagttagatccatcttttttattg
agcctcaatgcaagtctgatcccctttgcaaaccgtaatcttgcaacaagaacactgttt
caatcagagaaacactcaaggcaagcaataggatactatacaacaaattcccgtacaaga
tgtgatacctcttcacaccaattgttttatcctcaaaaaacattgtttaagactatgtct
tctgattgtctcaagaaagtggagctctataatggtcaaaatgctattgtggctgttaat
gttcattatggttataatcaggaagactctctagttttaaaccacgcttcaatagatcgt
gggctgtttcgaaccatgcattttcatacattcacatcagagacagatcatgatgacagc
gagtccaaaaattcatccaggattggagtagattttggaaagccaagcacagaaaaccta
agagtagataaacttgatgatgatggattgccttatattggttcggacttatacagtggg
gatgtattaattggaaaggtgagttcacagccctctgatgcaaatttcagcctcaagttg
aagcatactgaacgaggaagggttgatcaagtaataatggcaaataatgatgatggaaga
aggtttgcaagggtaaggttaagagaagcaagaactccatctcttggagataagttttcg
agcatgcatggtcaaaaaggagttatagggtttatagaagagcaagaaaatatgcctttt
acaatagaaggcattgttccagatcttatcataaatccccatgcatttccttcaagacaa
acacctggacagctttttgaatgtgccttatcaaaaataattgcgtcaagtggcattgtt
ggcgatgccacacctttcagtcctatcaccattgaatccattactgaacagcttcacagg
tatggttatgaacagtggggaaaagagcagatgtataatgggcggacggggtataaattg
cggtcaaagattttcattggccccacttactatcagaggctcatacatatgtctgaagac
aaattgaaatatcggaatcatggtccagtacaccctttaacacgacagccagttgccgac
agaaaacgtcatggaggggttaaatttggagagatggagcgtgattgtatgctagcacat
ggagcaactgccaatctgttggaaagactattctatttaagtgacttctcaagtatgcac
atatgtagtcagtgtcacatggttgcaacagtgattctcaaggagggtataagaggacca
tattgtcctttttgtaaaactgcaaaatatgctgttaaagtgaatgttccttacgcatgc
aaattgctctaccaggagctcttcagtatgggcatatgtctgaagtttttgactgaattg
tgttga

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