Cryptomeria japonica (Japanese cedar): 131032490
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Entry
131032490 CDS
T10556
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131032490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131032490
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131032490
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131032490
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131032490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_10
zf-CCCH_4
zf-CCCH_3
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
131032490
NCBI-ProteinID:
XP_057819475
LinkDB
All DBs
Position
11:complement(164618753..164623899)
Genome browser
AA seq
142 aa
AA seq
DB search
MEDVEGGLTFDFEEGVKIAPTFGKPPLFSNGLNLIAPSNLPPTSNLAVNSNLVLSFDAGR
NTTFVKSGSKNTRQTVCRHWLKGLCMKGDACEYLHQYDKSRMPICRNFLRFGKCHEEDCE
YKHINEETKECFIKDALAAMTG
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtcgagggaggtctgacgtttgattttgaggagggagtaaagatagctccc
acttttggtaaacccccattgttttcaaatggtctaaatttgattgctccttcaaatttg
cctcctacttcgaatttggctgttaattcaaatttggtgttatcttttgatgcgggtaga
aatacaacctttgttaagtctgggagtaagaataccaggcagactgtttgcagacactgg
cttaaaggattgtgtatgaaaggcgatgcttgtgagtatttgcatcagtatgataagagc
cggatgccaatctgtcgaaactttttgcggtttggaaagtgccacgaggaggactgtgag
tacaagcacatcaacgaagagacgaaagagtgttttataaaagatgcacttgcagcaatg
actggttaa
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