Cryptomeria japonica (Japanese cedar): 131033342
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Entry
131033342 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131033342
03420 Nucleotide excision repair
131033342
03430 Mismatch repair
131033342
03440 Homologous recombination
131033342
03460 Fanconi anemia pathway
131033342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131033342
03032 DNA replication proteins [BR:
cjf03032
]
131033342
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131033342
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131033342
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131033342
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131033342
MMR (mismatch excision repair)
131033342
DSBR (double strand breaks repair)
HR (homologous recombination)
131033342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
CDC24_OB3
DUF223
RADX
SBE2_N
Motif
Other DBs
NCBI-GeneID:
131033342
NCBI-ProteinID:
XP_059066516
LinkDB
All DBs
Position
1:487463020..487465236
Genome browser
AA seq
584 aa
AA seq
DB search
MASSATTSESIEHSTIDNLAKNQEYVPSPFAIQSINAGDDLPSTLLQVLSFQKMQNNTDD
TDRHKLVLSDGKYIQLAILPSKYATLIDSDILKIGTIVQLSSYTCRYIWNTRTIVVLSLE
VKQSDCPFFGKPEYLFKEQQPKIMSEDRPSTSKWSLQFATELPSPQTTTSENISPIKTLN
PYQNKWTIKGRVTHKRPIKAYSIATKNGHVFSFDIVDCDGSEIRITCFDEIAKLHSNRMD
IGLHYIISKGSVKEANARYNKLNSHLEITLSDTSIVKCCTNEEQADQQRPPFTPISELFQ
LTNNTLVDVIGLVLYVGDIIPIHRKDGSQTQKCVVKINDLSGSTIDINLWGPMTEQKGLE
LKNMLTNDSVVILALRNARAGYFNRKLVNITAATTLHINPSFPKAELLTLRGKDPLLVVP
FVAETIHIDGKYTRMTISSIPCPLIVNGRPCKKKCTQQADDSWFCSRCQMSMQDCDYSYL
FPLKLQDAIGTLWATAFDESGNHLLQKTTRQLYALQNDATTIETPSSVIKRVLSRYYSFT
LLVSTKTYNSESKMKVMVNKVSLVDFKAECHALLAEISCLSTET
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcagcaactacctctgaatccatagagcactccactattgataatttggca
aaaaaccaagagtatgtcccttccccttttgcaattcaatctatcaatgctggggatgac
cttccttcaacattgctacaagttttgtcatttcagaaaatgcagaacaacacagatgat
actgacagacataaattagtgttatctgatggcaaatacatacagttggcaatcttgcct
tctaaatatgctactctgatagattcagatattctaaaaataggcacaatagtccagtta
tcgagctatacatgccgatacatctggaacacaaggactattgtagtactgagtctggaa
gtgaaacaaagtgattgcccgttctttggtaaaccagaatatctattcaaagaacaacaa
ccaaaaattatgtctgaggacagaccatcaacatctaaatggtcgcttcagtttgcaact
gaattgccatccccacaaacaacaacttctgaaaatataagtcctatcaaaactttgaat
ccataccaaaataaatggacaatcaaagggagagttactcataaacggcctattaaggca
tatagcatagccaccaaaaatggccatgtctttagctttgacattgttgattgtgatggt
tctgaaattagaattacatgttttgatgagatagctaagttacactctaaccgtatggac
ataggtttacattatattatttcaaaaggatctgttaaggaggcaaatgcaaggtacaac
aagctaaacagtcatttagaaatcaccttgtctgatacatccatagtaaaatgttgcacc
aacgaagaacaagcagatcaacaaagacctcctttcacgcccattagtgaattgtttcaa
ctaacaaataacacactggttgatgtaattggtcttgttctatatgttggagatatcatt
cctattcataggaaagatggcagtcaaacacaaaaatgtgtggtgaaaattaatgatcta
tctggttcaacaattgacatcaacttatggggcccaatgacagaacaaaagggtctggaa
ttgaaaaatatgttgaccaatgatagtgtggttatccttgctttacgtaatgctcgtgct
ggctatttcaataggaagcttgtaaacataacagctgcaacaacattacatatcaaccca
agttttccaaaagcagagcttctaacattaagaggaaaggaccctttgcttgttgtaccc
tttgttgcagaaactatccacatagatggcaaatatactagaatgacaatttcttcaatc
ccttgcccactgatagtcaatggaaggccttgcaagaaaaaatgtacacagcaagctgat
gattcttggttctgctctagatgtcaaatgagtatgcaagactgtgattatagttacctc
tttcctctaaagttgcaagatgccataggtactctatgggccactgcatttgatgaaagt
gggaatcacttgctacaaaaaactacaagacagctctatgcactacaaaatgatgcaaca
acaatagagacaccttcctcagtgatcaagagagtactgtcacgttactattcattcaca
ctgctagtttctactaagacatacaattcagaatccaagatgaaagtgatggtcaataaa
gtttctcttgttgacttcaaagctgagtgccacgcactgcttgcagaaattagctgccta
agtacagagacttag
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integrated database retrieval system
