Cryptomeria japonica (Japanese cedar): 131033628
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Entry
131033628 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131033628
03420 Nucleotide excision repair
131033628
03430 Mismatch repair
131033628
03440 Homologous recombination
131033628
03460 Fanconi anemia pathway
131033628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131033628
03032 DNA replication proteins [BR:
cjf03032
]
131033628
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131033628
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131033628
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131033628
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131033628
MMR (mismatch excision repair)
131033628
DSBR (double strand breaks repair)
HR (homologous recombination)
131033628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131033628
NCBI-ProteinID:
XP_059073740
LinkDB
All DBs
Position
3:846549806..846552021
Genome browser
AA seq
527 aa
AA seq
DB search
MASSTATSESIDHSTIDNLAKTQECVPTPFAIQSINAGDDLPSALLQVLSFQKMTIVILS
LEVKQSDCPFFGKPVYLFKEQQPEMMSEDRPSTSKRSLQFATELPSPQTTTSENIRPIKT
LNPFDIVDCEGSEITITCFDEIAKLHSNRVDIGSHYLISKGSIKEENARYNKLNSHLEIT
LSDASILKRCTNEEQADQQSPPFTPINELFYLTNNTLVDIIGLVLYIEDIIPIHRKDGSQ
THKRVVKISDLSNSTIDINLWGPMAEQKGLKLKNMLSNDSVVILALCNARVGYFNGKLIN
ITAATTLHINPTFPEAELLTLRGKDPLLVVPFVAETIHIDGKYSRMTISSIHERMSIKPE
TIQTTLLVVLRFVNVTDQNFYYAACPLIVNGRPCKKKCTQQVDDSWFCSRCQMTMQDCNY
SYLLPLKLQDATGTLWATAFDEGSIHLLHKTAKQLCALQNDATTTETACSVIKRLLSHHY
SFTLLVSTETYNSESKMKVTVNKVAPVDFKVEWHALLPEIGHLSTQT
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcaacagccacctctgaatcgatagaccactccactattgataatttggca
aaaacccaagagtgtgtccctaccccttttgcaattcaatctatcaatgctggggatgac
cttccttcagcattgctacaagttttgtcatttcagaaaatgactattgtaatacttagt
ttggaagtgaaacaaagtgattgcccgttctttggtaaaccagtatacctgttcaaagaa
caacaaccagaaatgatgtctgaggacagaccatcaacatctaaacgatctcttcaattt
gccactgaattgccatccccgcaaacaacaacttctgaaaatataagacctatcaaaact
ttgaatccctttgacattgttgattgtgaaggttctgaaattacaattacatgttttgat
gagatagctaagttacactctaaccgtgtggacataggttcacattatcttatttcaaag
ggatctattaaggaggaaaatgcaaggtacaacaaactaaacagtcatttagaaatcacc
ttgtctgatgcatccatactgaaacgttgcaccaacgaagaacaagcagatcaacaaagt
cctcctttcacgcccattaatgaattgttttatctaacaaataacacgttggttgacata
attggccttgttctatatattgaagatatcattccaatacacaggaaagatggcagtcaa
acacacaaacgtgttgtgaaaattagtgatctatctaattcaacaattgacatcaaccta
tggggtccaatggcagaacaaaaaggcctaaaattgaaaaatatgttgagcaatgatagt
gtggttatccttgctttatgtaatgctcgtgttggctatttcaatgggaagcttataaac
ataacagctgcaaccacattacatatcaacccaacttttccagaagcagagcttctaacg
ttaagaggaaaggaccctttgcttgttgtaccctttgttgcagaaactatccacatagat
ggtaaatatagtagaatgactatttcttcaatccatgagcggatgagcatcaaaccagaa
acaattcagacaactttgctagtcgttttgcgctttgtaaacgtaactgaccaaaatttc
tattacgcagcctgtccactaatagtcaatggaaggccttgcaagaaaaaatgtacacag
caagttgatgattcttggttctgctctagatgtcaaatgactatgcaagactgcaattat
agttacctcttgccactaaagttacaagatgccacaggtactctatgggccactgcattt
gatgagggtagcattcacttgctacacaaaactgcaaaacagctttgtgcactacaaaat
gatgcaacaacaacagagacagcttgctcagtgattaagagactactgtcacatcactat
tcattcacactgttggtttccactgagacatataattcagaatcaaagatgaaagtgaca
gttaataaagtcgctcctgttgacttcaaagttgagtggcatgcactacttccagaaatt
ggccacctaagtacacagacttag
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