Cryptomeria japonica (Japanese cedar): 131033660
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Entry
131033660 CDS
T10556
Name
(RefSeq) uncharacterized protein LOC131033660
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131033660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjf03032
]
131033660
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131033660
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
131033660
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
131033660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
Ig_CFAP65__9th
UnbV_ASPIC
TopBP1_BRCT0
Motif
Other DBs
NCBI-GeneID:
131033660
NCBI-ProteinID:
XP_059077027
LinkDB
All DBs
Position
5:complement(28214363..28336480)
Genome browser
AA seq
1082 aa
AA seq
DB search
MAFKGVTVYLSRSLVAPESFDALHDALRYNGADICFCSDPSANSPNQYHIISSSDHEKHA
NLSAKGCNLVGPECVLRCAKEHRSFPKQGYTCCLAMDGVKVLASGFENEEKVKIEKLVTA
MCGELYSKTSLDIDFLVAKDVLSAKYKWALNVLRKPVVTIEWLYQCWREHRLVPHEPYRM
LPFSGLTICATGIPPDERKKIEGLIIQYGGQYSADLTKKCSHLLCNIAEGAKYKVARRWG
HVKILNQKWVPQSISAKACLDEELYPVISGGVASTLPFDSLSRKPYQEEKDVLSLHVPAT
AQSSLSQPLSSTPSNTTALAKEKSETVNLSAENISENTGCIDGGSQNEENDLYLESCRIM
LVGFEHVEMRKLVRMVWSGGGSRYMSFNEKLTHIIVGRPSEIEMKEIRKLTMWGVVNAVK
PLWLEDCTRSRREVDVSEKHIFSEKTSFHGIESHKRPKSVVSNLSSQEQNCIASLDNSKS
GSVFIEKIIPLENQSWEACNNESLNTKASLESNLNSEDASGQKSVLQEKMNEMNYPNQSE
FGCASVQHTNSSVSKTSNVFKGCRFGFSKSFPENLKNEIVAWVHQGGGFLVDDAMNKKVD
YIIERHGSRVDTVSYSPHATFVSSHWIRYCLEEGSMLDVGSHILYKPVTCQIPLAGFESM
RFSVSQYEEKDRILLRNLCYILGAKFTGKLNKKVTHLLCLYAGGPKYEAACTWGIEAITA
DWIYECVKQNKVLSLHAFRPREMPGEDGNVRSFDMTQYPAQVAHLASGELPSQWQNDSQP
GSQSQTVQVGGEKRERSPSTKKTLFGKKTRKQHHPSNGLLKKVSAKIDFGCNSDPWDEQS
VRWSQGMEKGCKEFAEFSNVPCERATKPQEKATQDLAKDPLIDNTVEELARDNDNRLYSV
KQSVEACSKNGLSNTITMNEHVHQIGRIEDSEATLDVASAIEDLIAQSELLHNDSRTETV
DNRNKISQEYPLVSRFREDPSCTTFRLPKEFSARHENEEENRNISNDVAHKAHEDFSESQ
MESQVIRYEVENTAKKMLMEKIQTRSMTSVRNEGRGQQINNDLARLLNVVDNGGKQKSKR
KS
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcatttaaaggtgttactgtatatctgtcgagaagccttgttgcacctgaaagcttt
gatgctctccatgatgcactcagatacaatggagccgacatttgtttttgttctgatcct
tctgctaactctccaaatcaataccacatcatctcttcctcagaccatgagaagcatgca
aatttaagtgcaaagggctgcaacttagttggtccagaatgtgttcttcgttgtgccaaa
gagcataggagtttccctaagcaaggatacacatgttgtctagccatggatggtgttaaa
gtacttgcttcaggctttgaaaatgaagaaaaggtcaaaatagaaaagcttgtgactgcc
atgtgtggtgaattatattcaaagacttcattagatattgactttttggttgcaaaagat
gttttgtctgcaaaatacaagtgggcgttgaatgtgttgagaaagccagtagtgaccatt
gaatggttgtatcagtgttggcgtgaacatcgccttgttccacatgagccatatcgaatg
cttcctttttctggattgacaatatgtgcaactggaatccctccagatgaaaggaaaaaa
attgagggacttataatacaatatggaggtcaatattctgcagacttgacaaagaagtgc
tctcacttactttgtaatatagcagaaggagcaaaatataaggttgctagaaggtggggc
catgtaaaaattctaaaccaaaagtgggttccccaatctatttctgccaaagcatgtctt
gatgaagagttatatccagtgatatctggaggagtggcttcaactcttccttttgatagc
ctttcaaggaagccttatcaagaagagaaagatgttctatctctacatgtgccagctact
gcacaaagctctctgtcccaacctttatcttcaactccttctaatacaacagcattagca
aaagaaaagtcagagacagtgaatttatcagctgaaaatatatcagaaaatacgggatgc
attgatggtggttctcaaaatgaagagaatgacctctacctggagagctgtaggatcatg
cttgtaggatttgagcatgttgaaatgcggaagctagttcggatggtttggagtggaggt
ggttctagatacatgtcatttaatgagaaactgacacatataatagttggaagaccatca
gagattgaaatgaaggagataagaaaactcacaatgtggggtgttgtcaatgcggtcaaa
cctctatggctcgaggattgcactcgaagtagacgagaagttgatgttagtgaaaagcac
attttttctgaaaagacttcctttcatggcatcgaatctcataaaaggccaaaatcggtt
gtttctaatttgagttctcaagagcagaattgtatagcttccttggacaactcaaaatct
ggatctgtttttatcgagaagataattccacttgaaaatcaatcatgggaagcctgcaat
aatgagtctctaaatacaaaggcttctttggaatcaaatttgaattctgaagatgcctct
gggcagaaatctgttttacaagagaagatgaatgagatgaattatccaaaccaatcggaa
tttggttgcgcctcagttcaacatacaaatagttctgtatcaaaaacatctaatgtcttt
aaaggatgcagatttggcttttcaaagagttttccagagaacttgaaaaatgagattgtt
gcgtgggtccatcaaggaggaggattccttgtggatgatgccatgaataagaaagttgat
tatattattgagcgccatggatcaagggttgatactgtcagctacagtcctcatgctaca
tttgtttcaagtcattggataagatattgcttggaggaagggtctatgctggacgttgga
agtcacatattatataagcccgtgacatgccaaattcccttggctggatttgaaagtatg
cgcttttctgtttcacagtatgaagagaaagataggatattactccgaaatttgtgctat
attctgggagccaaatttactgggaagctaaataagaaagtaactcatttactatgccta
tatgctggtggaccaaaatatgaagctgcatgcacttggggtattgaggccattactgca
gattggatatatgaatgtgttaagcaaaataaagtactctcccttcatgcttttcgtcct
agagagatgccaggagaagatggaaatgtccgttcttttgacatgactcagtatccagcc
caggttgctcacttagcatctggggagcttccatcccaatggcaaaatgacagccagcct
gggtcacaaagccaaacagttcaggttggaggagagaagcgagaaaggtcaccatcaaca
aagaaaacattgtttggcaagaaaactagaaaacaacaccatcctagcaatggcctattg
aaaaaggtttctgcaaaaattgattttggatgcaattctgatccttgggatgagcaatct
gttcggtggtcacaagggatggagaagggttgcaaggaatttgcagaattttctaatgtt
ccatgtgaacgagcaacaaaacctcaagagaaagctactcaagaccttgccaaagatcca
ttgattgataacactgttgaagaattagcaagggacaatgataatcgattgtacagtgtt
aagcaatctgttgaagcatgttcaaaaaatggtctaagcaatactataacaatgaatgaa
catgttcaccagattggcaggatcgaagattctgaagccactcttgatgtagcgtctgca
atcgaagatttaattgctcagtctgagctattgcataatgactcacgaactgagacagtg
gacaatcggaataaaatctcacaagagtatcctttagtttctcgatttcgagaagatcct
tcatgcacaacctttagacttcctaaggagttttcagcaaggcacgaaaatgaagaagag
aaccgaaacatctcaaatgatgttgctcacaaagctcatgaagattttagtgaatcacaa
atggagtcccaggtgattcgatacgaagtagaaaatacagcaaagaagatgttaatggaa
aaaattcaaactcggagcatgacttctgtaaggaatgagggaagaggacagcagattaac
aacgatcttgcccgcctactaaatgtagtagacaatggaggcaagcaaaaatctaaaaga
aaaagttga
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