KEGG   Cryptomeria japonica (Japanese cedar): 131034131
Entry
131034131         CDS       T10556                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
  KO
K07466  replication factor A1
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03420  Nucleotide excision repair
cjf03430  Mismatch repair
cjf03440  Homologous recombination
cjf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131034131
   03420 Nucleotide excision repair
    131034131
   03430 Mismatch repair
    131034131
   03440 Homologous recombination
    131034131
   03460 Fanconi anemia pathway
    131034131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cjf03000]
    131034131
   03032 DNA replication proteins [BR:cjf03032]
    131034131
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131034131
Transcription factors [BR:cjf03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    131034131
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    131034131
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     131034131
   MMR (mismatch excision repair)
     131034131
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     131034131
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 CDC24_OB3 tRNA_anti-codon OB_MEIOB_N SH3_Rv0428c PGDH_inter
Other DBs
NCBI-GeneID: 131034131
NCBI-ProteinID: XP_057821511
LinkDB
Position
1:complement(243566547..243567719)
AA seq 390 aa
MYQYSTPKSTGQVFSFDMIDDEGTEIRITCFGDVAEMHYHRVEPGTYYTVSKGCVKEANT
KWNMLNSHLEITLDNNSILKRCDVVVESEANNSQFTPINEITYCTNNTLVDVIGIVVAVG
EPSLIRRKDGSEVTKRTVKINDASTFTIDVNLWGATWQGLGEDLKNMHTTQTAVVLVVRN
AHVGYFNGKVINTTTATTLNINPSVPETETLMSRGKIPDALLPLSCVAGQLNSQYSRMTI
TAILERTSVLSETVESTIRAVVRIIKTDSFCYPACPLKFNGKECKKKCAQQSDNQWFCSR
CQTAVPECNYKYLLQMKLQDHTGALWATAFDEVGTNILQISAKELYMLQYDLTTQKHLSP
LSSMCFCLPLFSHSLLQQTCTIQNPGSKQR
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgtatcaatatagtacaccaaagtccactggccaagtatttagctttgacatgatagat
gatgaaggtactgaaattagaataacttgctttggcgatgtagcagaaatgcattatcat
agggttgaaccaggaacatattatactgtgtcaaaaggttgcgttaaagaagctaacact
aaatggaatatgcttaacagccatcttgagataactttggacaacaattcaatattgaag
cgttgtgatgttgttgttgaaagtgaagcaaataattctcaattcacaccaatcaatgaa
attacatactgcaccaacaacactttagttgatgttattggtattgtagttgctgttgga
gaaccctcattaattcgtaggaaggatggaagcgaagtaacaaagagaactgtaaaaata
aatgatgcctcaacttttactatcgatgttaacttatggggagcaacatggcaagggcta
ggtgaagatttgaagaacatgcacacaacccaaacagctgttgtccttgtagttagaaat
gctcatgttggttatttcaatggaaaggtgatcaacacaaccacagcaacaactctaaat
ataaacccttctgtacctgaaacagagacacttatgtcaagaggaaagattccagatgcc
cttttgccactatcgtgtgttgctggtcagcttaactcacaatacagtaggatgacaatc
acagctattttagagcgtacaagtgttctctctgaaacagttgaaagtactattagggct
gttgtgagaatcattaaaactgattctttttgctatccagcctgccctttgaaatttaat
ggaaaagaatgtaaaaagaaatgcgcccagcaaagtgataatcaatggttttgttcaaga
tgtcaaactgctgtgccagaatgcaattacaaatacttattgcaaatgaagctccaagat
catacaggggctctttgggctactgcctttgatgaggttggcacaaatatactgcaaata
tctgccaaggagctttacatgctgcaatacgatttgactacacaaaaacacctcagtcca
ttatcaagcatgtgcttttgtcttcctttgttttcacactctctattacaacagacatgt
acaattcagaacccaggctcaaagcaacgataa

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