Cryptomeria japonica (Japanese cedar): 131034432
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Entry
131034432 CDS
T10556
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131034432
03041 Spliceosome [BR:
cjf03041
]
131034432
03036 Chromosome and associated proteins [BR:
cjf03036
]
131034432
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131034432
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131034432
mRNA cycle factors
Common to processing body (P body) and stress granule
131034432
Spliceosome [BR:
cjf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131034432
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
131034432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Serglycin
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131034432
NCBI-ProteinID:
XP_057821909
LinkDB
All DBs
Position
1:170752983..170764473
Genome browser
AA seq
653 aa
AA seq
DB search
MPTSWGDSVPNSEAENVADSRGSSARGAPAKAAYVPPHLRNRAAQGSSEAATVAAPVESG
SASRPGSGSGSGSGSGSAYPPSRSAWGTRESGRLGSGYGGGQSYGGYRGGVGGGRGRGGG
GWNNSNRSGGWDSRGKEREVNPFDDEDELEKEKPEEQENSGINFDAYEDIPVDTSGENVP
PPVNTFAEIDLGDALNQNIKRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCF
PIIAGIMRGQTPQRPRGARTSMPLALILSPTRELSSQIHEEARKFAYQTGVKVVVAYGGA
PINQQLRELERGVDILVATPGRLVDLLERARVSLSMVSYLALDEADRMLDMGFEPQIRKI
VQQMDMPPAGHRQTMLFSATFPREIQRLAADFLSDYIFLAVGRVGSSTDLIMQRVEFVQE
ADKRSHLMDLLHAQKADGTHGKHSLTLVFVETKKGADSLEYWLCNNGFPATTIHGDRSQQ
EREQALRSFKSGRTPILVATDVAARGLDIPHVSHVINFDLPNDIDDYVHRIGRTGRAGKS
GLATAFFNDNNINIARSLGDLMQESNQEVPQWLLKYAVRSTYGGGRKPRAGGRFGGRDFR
RDGGRGGPDNYGGGYGGNPYGTSSYSGGYGAGYGGSAVGGYSQDGPVIDSAWD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgccaacttcttggggagactcagtaccaaactcagaagcggaaaatgtagctgatagt
agaggttcatctgcccgcggggcacctgctaaagcggcttatgtgcctcctcatctgcga
aatcgagcagcacaaggttcaagtgaagcagccactgttgctgctccggttgaatctgga
tcagcatctaggcctggttctggttctggttctggttctggttctggttctgcatatccc
ccatcgcgctccgcttggggtacccgtgagagtgggagattggggtcaggttatggagga
gggcaaagctatggtgggtatcgtggtggcgtcggtggtggcaggggccgtggtggtggt
ggttggaataacagtaacagatctggtggttgggacagtaggggcaaggagcgggaagtg
aatccttttgatgacgaagatgaattggaaaaggagaagccagaagaacaggaaaatagt
ggcattaattttgatgcttatgaggatatccccgttgacaccagtggggagaatgttccc
cctcctgtaaatacatttgcagaaattgatttgggggatgcactaaaccagaatattaaa
aggtgcaagtatgtcaggccgactcctgtacagcgttatgcaatacctatttctcttgct
ggacgggatcttatggcttgtgcccagacaggttccggtaaaaccgctgcattttgtttc
cctataattgcaggaattatgaggggccagacaccccagcgacctcgtggagcacggaca
tcaatgccattagcacttattctttctccaacaagagaattgtcaagtcagatacacgag
gaggctagaaagtttgcatatcaaactggtgtcaaagtagtggttgcttatggaggcgca
cccatcaaccagcagttgcgtgaactggagaggggtgttgatattcttgttgcaactcct
gggcggctagtggatcttcttgaaagggcaagagtatcactatctatggtcagttacctg
gctttagatgaggctgatcgtatgcttgatatgggttttgagcctcagatccgtaaaata
gttcaacagatggatatgcccccagcaggtcacagacaaaccatgcttttcagtgccaca
tttccaagggaaattcagaggctggctgcagattttctctcagattatatttttctggct
gttggaagggttggttcaagcacagatcttattatgcagagagttgagtttgttcaagag
gctgataagcgaagccacttgatggatcttcttcatgctcaaaaagctgatggaactcat
ggcaagcattcgctaacattggtctttgtggaaacaaaaaagggagccgattcgttggaa
tattggttgtgtaacaatggatttcctgcaacaactattcacggggacaggtcacagcag
gagcgtgaacaagctttaaggtctttcaagagtgggagaactcccattcttgtagctaca
gatgttgctgctcgaggacttgatatcccacatgtttctcatgtcattaattttgatttg
ccaaatgatattgatgattatgtgcatcgcatagggcgtacagggcgtgctggaaaatca
ggattggctacagcctttttcaatgacaataacattaacatagctaggtctcttggggat
ctcatgcaagagtcaaaccaagaggtgcctcagtggctattgaaatatgctgtaagatct
acttatggtggaggcagaaagcctcgtgccggaggcaggtttggtggacgtgattttcga
agagatggtggcaggggaggtcctgataattatggaggtggatatgggggaaatccctat
ggtacttcaagctatagtggaggatatggtgcaggatatggtggatctgctgtgggtggt
tatagtcaagatggccctgtcattgacagtgcatgggattag
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