Cryptomeria japonica (Japanese cedar): 131036024
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Entry
131036024 CDS
T10556
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131036024
09123 Folding, sorting and degradation
03018 RNA degradation
131036024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131036024
03041 Spliceosome [BR:
cjf03041
]
131036024
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131036024
mRNA degradation factors
5'-3' decay
Lsm complex
131036024
Spliceosome [BR:
cjf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
131036024
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
131036024
NCBI-ProteinID:
XP_057823800
LinkDB
All DBs
Position
3
Genome browser
AA seq
85 aa
AA seq
DB search
MAHNPSHLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGGPE
NT seq
258 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaatccttcacaccttcttccatcagagctaatagacaggtgcataggatca
aagatatgggtgatcatgaaaggcgacaaggagctcgttggcactcttaggggcttcgac
gtttatgtcaacatggttctggaagatgtcacagaatatgaaataacatccgaaggccga
aggattacaaagcttgatcaaattttgcttaatggaaacaatattgctattcttgttcct
ggtggtggacctgaatga
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