Cryptomeria japonica (Japanese cedar): 131036115
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Entry
131036115 CDS
T10556
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03410
Base excision repair
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131036115
03410 Base excision repair
131036115
03420 Nucleotide excision repair
131036115
03430 Mismatch repair
131036115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjf03032
]
131036115
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131036115
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131036115
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131036115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
AAA_22
PTCB-BRCT
AAA_19
RCF1-5-like_lid
BRCT_2
AAA_5
Gp44_lid
AAA_18
AAA_30
nSTAND3
Sigma54_activ_2
RuvB_N
Rad17
AAA_14
AAA_28
Zeta_toxin
RsgA_GTPase
AAA_assoc_2
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
131036115
NCBI-ProteinID:
XP_057823911
LinkDB
All DBs
Position
4:567288062..567429920
Genome browser
AA seq
977 aa
AA seq
DB search
MSDIRKWFMKQPHKNAMPDKERPKQTETPKQDNTSEGANTGRKKVSKYFATPNPENTIKS
IPDEDFKPEKASTKRKKQKVDVDDTSEIEVPSPKKLHKDDTNVTKEKSKTAHKKDDGISG
DYSDGSNFGSRGIGGNLSAKNENENLPQRGGRGGVGRGGGGSDGGGRGRGGGRGAFGNFG
ERAAPPHKGEKEVPEGAENCLQGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTS
YLLADEDVGGRKSEKAKELGTPFLSEDALFDMIHKSKPTKSTGKENLQKKDQKDIKVAEY
TSGIMPKIGEKGQINKDFGRKTSEKCLQPEVPDRKISANVKGNTEIWTEKYRPKTPNDII
GNQSIVCIILDVLVKQLHDWLAHWDEQHLNVENKGTKSKKRGSGSNSDISKKAVLLSGTP
GIGKTTSARLISQMLGFTTIEVNASDSRGKADAKIERGIGGSTSNSVKELINNEALNFGH
SNSSRCQKFVLIMDEVDGMSGGDRGGVTDLISSIKMSKIPIICICNDRYNQKLKSLVNYC
LALNFRKPTKQQMAKRLHQIAELEGVQVDEIALEELGERVHGDMRMAINQLQYMSLSSSV
LKYADMKARLQSNAKDEDVTPFTAVDKLLGYEGGRLRLDERMDFCMTDPDLIPLIIQENY
LNYRPSAASRDVDGTLRMDLIARAAESIADGDIVNVQIRRYRQWQHSQMGAFASSIIPAA
FMHGQREVLVQGERNFNRFGGWLGKNSTWGKNYRLLEAVHVHVLASRISEPTREALRMDY
LPVFLLKLTNPLRTLPKEEGVQTVVKFMDEYSINQEDVDTIVDLCKFQGRPNPYDGVPPA
VKSALTKAYKQHEQGHRVRAADLLPSVLIPGQKKTPKSKRVASLLTEVEDDFVLQNNGDN
VEEEEEPVDEEVSEVSAHSNGSLHLSLQENKPKGVEIQLDIKNKEVLRGNPSKANQSKSH
AEKEKPTSGTKNVKRKR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacatacgcaaatggttcatgaaacaacctcacaaaaatgctatgcctgataag
gagagaccaaagcaaacagaaactccaaaacaggacaatacctcagaaggagcaaataca
ggaaggaagaaagtaagtaaatatttcgccacaccgaaccctgaaaacactattaaatca
atcccggatgaagatttcaagccggaaaaggcttcaacaaaaagaaagaaacagaaagtg
gacgtggatgacacatctgagatagaagttccatcccccaagaagcttcacaaagatgat
acaaatgtaactaaggagaagagtaagactgctcataaaaaagatgatggaatatcagga
gattactcagatgggtctaatttcgggagccgtggcattggtggtaatttgtctgcaaaa
aatgaaaatgaaaatcttcctcagcgtggtggcagaggtggagttggcagaggcggaggt
ggaagcgatggtggaggtagaggccgaggaggtgggagaggtgcttttggtaacttcggg
gaaagagctgctcccccgcataaaggtgaaaaggaggttccggaaggtgctgaaaactgc
ttgcagggtttgacctttgtaataagtgggactcttgatagtttagagagggaggaagca
gaagatctgatcaagcgccatggtggcagagttactgggtcggtcagcaagaaaacgagt
tatttactggctgatgaagatgttggaggccgtaaatctgagaaagcaaaggagcttgga
acaccttttctttctgaagatgctctgtttgacatgatccataagtcgaaacctacaaag
tcgactggcaaggaaaatctgcagaagaaagaccagaaagatattaaagttgctgagtat
acgagtggtattatgccaaaaattggggaaaaaggtcaaatcaacaaggattttggcagg
aaaacaagtgaaaaatgtttgcagcccgaggttccagacaggaaaataagtgcaaatgtt
aaaggaaatacagaaatatggacagagaagtatcggccaaagactcctaatgatataatt
gggaatcaatccattgtatgtatcattcttgatgtcttagtgaaacagttacatgattgg
ctggcacattgggatgaacaacatctaaatgttgagaataagggaactaaaagcaaaaaa
cgcggtagtggtagcaatagtgacatctcaaaaaaggcagtgctgttaagtgggacgcct
ggtattgggaagacaacttctgcaagattgataagtcagatgcttggtttcacaacgatt
gaggttaatgctagtgacagtcgtgggaaggctgatgctaagatagaaagaggcattgga
gggagcacatcaaattcagtaaaggagttaatcaacaatgaagctttgaattttggccac
tcaaatagttcaaggtgtcagaaatttgttttaattatggacgaggttgatggcatgtct
ggaggagataggggaggagtaacagatcttatatccagcattaaaatgagcaagataccc
ataatttgcatttgtaatgatcgctacaatcaaaaattgaaaagtcttgtcaactactgc
cttgctttgaattttaggaagccaacaaagcaacagatggctaaaaggttgcatcaaatt
gcagaattggagggtgttcaggttgatgagatagcactcgaggaacttggcgagcgtgtc
catggagatatgcggatggcaataaatcaactgcaatacatgagcctctcatcttctgtc
cttaaatatgctgatatgaaagctcgtttgcagagtaatgcaaaagatgaagatgttaca
ccatttacagctgtggacaagttacttggatatgaaggaggtagactaagacttgatgaa
agaatggatttttgcatgacagatccagatctcattcctcttattattcaggagaactat
ttaaattataggccaagtgctgcaagtcgtgatgtagatggtacacttcggatggactta
attgcccgtgcagcagagtctattgcagatggagatatagtaaatgtacagattcgtagg
tatcgccagtggcagcattctcaaatgggtgcctttgcatcatctatcatccctgcagct
tttatgcatggtcagagagaggtccttgtgcagggagaacgcaattttaataggtttgga
ggatggttagggaaaaattcaacctggggcaagaactatagactgctggaggctgtacat
gttcatgttcttgcatcacgtatcagtgagccaaccagagaagctctacggatggactac
ctgccagttttcttgttgaaattaactaaccctctgcggacattgcctaaggaggaggga
gtacaaactgttgtaaagttcatggatgagtactctataaatcaagaagatgtagacaca
atagtagatttatgcaaattccagggtcgtcccaatccttatgatggggtacctcctgca
gttaaatcagccttgacaaaagcatataaacaacatgagcagggccatcgtgttcgggca
gctgatctacttccatctgttctcattcctggtcaaaagaaaacaccgaagtcaaaacga
gtcgcttctcttttgacagaagttgaagatgattttgttttacagaataacggtgataat
gttgaagaggaggaagaacctgttgatgaagaagtctcagaagtttcagcccacagcaac
ggaagtttacacttgagccttcaagaaaacaaaccaaaaggagtcgagatacaattagat
ataaagaacaaagaggtgttaagaggaaatccatccaaggcaaaccaatctaaatctcat
gctgaaaaggaaaagccaacttctgggacaaaaaatgttaagaggaaaagataa
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