Cryptomeria japonica (Japanese cedar): 131036270
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Entry
131036270 CDS
T10556
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131036270
Spliceosome [BR:
cjf03041
]
Complex C
Other components
Step II factors
131036270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_16
ABC_tran
Flavi_DEAD
AAA_30
TsaE
PhoH
SLFN-g3_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131036270
NCBI-ProteinID:
XP_057824106
LinkDB
All DBs
Position
6:complement(607225039..607229740)
Genome browser
AA seq
993 aa
AA seq
DB search
MEVDAKNGIKRLEYLSLLSKVCEELEAYSVPSDKVLAEFVTDLGRNSEKVEDFDSKLREN
GAEFPKDLLSTLFTIIHAILGPASKCKSMNKERKNEISGLSVLDIDKEIEQESVAAEPHV
LGVYTGKDIFYMNKPFSHAFSSNPNLASLNNYRATPSLSGVTIVEEEKEKENPRKKRRMS
SPERWEIKQLTAAGWKPTDTFSDCEEDEEDVEIEIELNEEEPAFLHGEHRHSTDMPPVKI
LKDPDGSLQRADTTQSAFCKEKREVRERQQRIKLDSIPNDLNRPWEDPMPEPGERHLGQE
LKGVWRSTYAIPEWKKDAFGKASTFGQRSKLSIQDQRQSLPIFMLKRELINAVNDNQVLV
VIGETGSGKTTQITQFLAEAGYTTSGKIACTQPRRVAAMSIAKRVAEEFGCRLGDEVGYA
IRFEDCTGPDTLIKYMTDGTLFRELLVDSQLSQYSVVMLDEAHERTVHTDVLFGLLKQLI
KRRPDIRLIVTSATLDAEKFSGYFLNCNIFTIPGRTYPVEVYYSKQPETDYLDAALLTVL
QIHLEEPEGDILLFLTGQEEIDTACQILYERMKGLGSNVPELIILPVYSALPSEMQSRIF
EPVPPGKRKVIVATNIAEASLTIEGIYYVVDPGFSKQNVYNPKQGMNSLIVSPISQASAK
QRAGRAGRTGPGKCYRLYTESAYRSEMLPTTVPEIQSSNLGFITLNMKVMGINDLISFDF
MDPPSPQTLTAAMEQLYSLEALDEEGLLTMLGRKMAEFPLEPPLSKMLIASVGLGCSDEI
VTIIAMLQTQNIFYRPQEKQAQADQKRANFFQPEGDHLTLLAVYEAWKANNFSVPWCFVN
FLHYRSLRRAEDVRKQLLMIMDRYKMDVVSAGNNSMKIQKAIAAGFFFHAARKDRQEGYR
TIVGNHLVYIYPSSALFQRQPDWVIYHELVMTSKEYMRETTIVDPKWLVELAPRFFRKAD
STKLSKRKRQECIEPLYDQYHEHNSWRFSKRHG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggatgcaaaaaatggaataaagagactggagtacttatctctactttctaag
gtgtgtgaagagcttgaagcgtactcggtgccttcagataaagttttagcagagtttgta
acagatctcgggcgtaacagcgagaaggtcgaagattttgattctaagctgagggagaat
ggtgcagaatttccgaaagacctgctaagtaccttgttcacgattattcatgcaattctt
ggtcctgcttccaaatgcaagagcatgaataaggaaagaaaaaacgagatttcggggctc
tctgtgctggatatagataaggaaattgaacaagagtcagtagcagcagagcctcatgtt
ttgggggtttatacagggaaggacattttttacatgaacaaacccttctcccatgctttt
agctcaaatcccaatctagccagtttaaataattatagggcaaccccttcactgtcgggg
gtcacaattgtggaggaggagaaggaaaaggagaacccgcggaagaagaggagaatgagc
tcccctgaaagatgggaaataaaacaactgactgcagcggggtggaagcctacggatact
ttttctgattgtgaagaggacgaggaggatgttgaaattgaaattgaattaaacgaggaa
gagcctgctttcttgcacggtgaacatcgccactccacggatatgccccctgttaagatt
ttgaaggatccagatggttcacttcagcgggcagacacgacgcaatcagcattctgtaaa
gagaaaagagaagtgagagaacgacagcagaggataaagttggactcaatccccaatgat
ttgaatcgaccgtgggaggatccaatgccggagccaggggaaaggcatttagggcaggag
ttgaaaggtgtatggcgttcaacatacgctatacctgagtggaagaaggatgcattcgga
aaagcttccacttttggacagcgctcaaagctttcaattcaagaccaaaggcagagtctt
ccaatcttcatgctcaagagggaattgatcaacgcagtaaatgacaaccaagttctcgtt
gttattggagagactgggtctggaaagacaactcaaataacccaatttttggcagaggca
ggctacacgacctcaggtaagattgcctgcactcaacctcgtagagtagcagctatgtct
atagcaaaaagagtagcagaggaatttggatgtaggttgggagatgaagttggttatgct
atccgatttgaggactgcacagggccagacactttgatcaagtatatgactgatggtaca
ctattcagagagcttttagtagacagccaactttcacagtattccgtagtcatgctggat
gaggctcatgagaggacagttcacacggacgtgctctttgggcttctgaagcagctgatc
aaacgcagacctgatattaggttaattgtcacttcggcaaccctagatgctgagaagttc
tcaggttattttctgaactgcaatattttcaccattcctggaagaacttatcctgtagaa
gtgtattatagtaaacaaccggaaaccgactatctagatgccgcactgctcacagtactg
caaattcacctggaagaaccggaaggtgacattcttctcttcttaactgggcaagaggaa
attgacactgcctgccagattctgtatgagcgaatgaaagggctagggagcaatgttcct
gaactaatcatacttccagtatatagtgctcttccgagtgagatgcaatcaaggattttt
gagcctgttcctcctgggaaaaggaaagtgattgttgctaccaatattgcagaagcttca
ctcaccattgaaggaatatattatgtcgtggatcccggattctctaagcaaaatgtatac
aacccaaagcaaggaatgaactctctgattgtttctcctatttctcaagcatcagccaag
caacgtgctggacgggctgggcgtactggtccaggcaagtgttatcgcctttatacagag
agtgcatatcgtagtgagatgttgcctaccactgtgccagaaatacagagtagtaatctt
ggattcataacgctgaacatgaaggtcatgggaattaatgatcttatctcatttgatttt
atggatcccccttctcctcaaaccctcacagctgcaatggaacaactctacagcttggag
gctttggatgaagagggacttctaactatgctaggtaggaagatggctgaattccctctg
gagcctcctctgtcaaagatgctcattgctagtgttggtcttggctgtagtgatgagatt
gtaaccataatagccatgcttcaaactcaaaacattttttatcggccccaagagaagcag
gctcaagctgatcagaagagggcaaactttttccagccagaaggtgatcacttgacttta
ttggcagtgtatgaggcctggaaggctaataacttctcagttccctggtgctttgtgaat
tttcttcattataggtctttaaggagggcagaagatgtcaggaagcaactgcttatgatt
atggacaggtataaaatggatgttgtgagtgctggaaacaactctatgaaaatacagaag
gcaattgctgcaggttttttcttccatgcagctaggaaggatcgtcaggaagggtatcgt
actatagttggaaatcatctagtctatatttatcctagcagtgctcttttccaacgccaa
cctgattgggtgatttatcatgaacttgttatgactagcaaagagtacatgcgcgaaaca
actattgttgatccaaaatggttggtggaattagcaccgaggtttttcagaaaagctgat
tctacaaaattgagcaagcgcaagcggcaggagtgcatcgaacctctatatgaccaatat
catgaacacaactcctggcgtttcagcaaacgtcatggctag
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