KEGG   Cryptomeria japonica (Japanese cedar): 131036459
Entry
131036459         CDS       T10556                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    131036459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjf03021]
    131036459
   03036 Chromosome and associated proteins [BR:cjf03036]
    131036459
Transcription machinery [BR:cjf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     131036459
   Coactivators
    SAGA/TFTC/STAGA complex
     131036459
Chromosome and associated proteins [BR:cjf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     131036459
    STAGA complex
     131036459
    TFTC complex
     131036459
    SAGA complex
     131036459
    SLIK complex
     131036459
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C WDR90_beta-prop_4th NBCH_WD40 ANAPC4_WD40 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_HPS5 Tricorn_2nd eIF2A Beta-prop_IFT140_2nd Beta-prop_NWD2_C Beta-prop_DCAF12 WD_LRWD1 PROPPIN Beta-prop_ACSF4 PALB2_WD40 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 131036459
NCBI-ProteinID: XP_057824332
LinkDB
Position
7:208556180..208702556
AA seq 664 aa
MEESEIENAVMAYLKRKGFRQTELALQEEQRKTSSSAAKTDPEIAKQIIAYAELDNGPVR
YREEYSRLRTWTYNSLDVHKHELLRVLYPVFIHCFMDLVAKGHSQEARSFFQSFREDHEP
SHLRDLQKLEGVLSPHHLEEMEFAHCLRQNKVTMKLCKYSYELLLQHLHKTESMVMLGVI
NERINLQVPPGQPCSNSEEVEVVALTGSSQEAVEQINQKEIHWGVLEDSLEERLEKEILA
AEAEKAEAEDKEGHGEESKKKAGEGGKSGGPNKKMKKDKLTGTTGKGVRTEANVVSSAPR
VKAELTMPTISMEVERSALEDLRNRARLSSSALPSVSFYTFVNTHYSLNCASISHDGGLV
VGGFSDSSLKVWNMSKMGEQHGNSENGEVADGQNEHSAGLDVGKRSYTLLQGHAGPVYAA
NFSPEGEYILSASADNTVRLWSSKLNANLVCYKGHNYAVWDVQFSPVGHYFVSASHDRTA
RVWSMDRIHPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQTGECVRMFVGHH
GMVLSIAMSPDGRYMASGDENGTIRMWDLSSGRCITPLTGHTSCIWTLAFSCEGSLLASG
SADCTVKLWDVNASSRTPRMEEKAASAQRLRLLKALPTKSTPVHALRFSRRNLLFAAGAF
TKSP
NT seq 1995 nt   +upstreamnt  +downstreamnt
atggaggagtcagaaatagaaaatgcagtaatggcatatttgaagaggaagggtttccgc
caaacagagcttgcgcttcaggaagagcaacggaagacatcttcatcggccgccaagaca
gaccccgagattgccaaacagatcattgcatatgcggaattagataatgggccagtacga
tacagagaggagtacagcaggctacgaacatggacctataattcgctagatgtgcacaag
catgaacttcttcgtgtactttatccagtttttatccattgtttcatggacctagtggct
aagggtcattctcaggaggctcgttcattttttcaaagctttcgggaagatcatgaaccc
tcacatcttcgtgacctgcaaaagttggaaggtgttttatctccccaccatttggaggag
atggaatttgcgcattgtttgagacagaataaagtgaccatgaaattgtgcaagtactct
tatgaactgctgctacaacatttgcacaagaccgagtctatggttatgcttggagtcatt
aatgaacggataaatttgcaagtacctcctggacaaccatgttcaaattcggaggaggta
gaagttgtagcattaactggcagtagtcaagaggcagttgaacaaataaatcaaaaggaa
atccattggggggtacttgaagactccttggaggagagattggagaaagaaatcttggct
gctgaggctgagaaagctgaagcagaagataaagaaggacatggagaagagagtaagaaa
aaagctggagaaggtggaaagtctggaggtcctaacaaaaaaatgaagaaggataaactt
actggtacaacaggcaagggagttcgtacagaggcaaatgttgtttcttcagctccccgt
gttaaagctgagcttacaatgcctaccatttccatggaagttgagcgctctgctctagaa
gatctccgaaatcgcgctcgtctgagcagctcagctttgccatctgttagcttttatacc
tttgtcaacacccactacagtctgaactgtgcatctatatctcatgatggaggattggtt
gttggtggcttctcggattcatctttgaaggtatggaacatgtccaaaatgggcgaacaa
catggtaattctgagaacggagaagttgctgatggtcaaaatgaacactcggcaggttta
gatgttggaaaaagatcttacacattattgcaaggtcatgctggacctgtttatgcagca
aatttcagtcctgaaggggaatacattttatctgcatcggcagataatacagttcgatta
tggagttccaagctgaatgcaaatcttgtctgctacaaaggacacaattatgctgtatgg
gatgttcagtttagtcccgtgggacactattttgtaagtgcttcacatgatcgaactgcc
agagtttggtcaatggacagaatccatcctttacggatcatggcaggacatctttccgat
gttgattgtgtgcagtggcatgccaactgcaactatattgctactggatccagtgacaag
actgtcagattatgggatgttcaaactggtgagtgtgtacgcatgtttgttggtcatcat
ggcatggtcttgtccatagcaatgtctcctgatgggcgttacatggcatctggagatgaa
aatggtactattagaatgtgggatctatcaagcggtcgatgtataactcctttaacaggg
cacacatcctgcatatggacacttgctttcagttgtgaaggttcactactagcatctggc
tcggctgactgtacggtaaaattatgggatgtcaatgcaagttcaagaacacctcggatg
gaagaaaaagctgcaagtgcacagagattgcgattattgaaagctcttccaacaaagtca
acaccagttcatgcattacgattttctcggagaaacctcctatttgctgctggtgcattt
actaaaagcccatga

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