Cryptomeria japonica (Japanese cedar): 131036470
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Entry
131036470 CDS
T10556
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131036470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131036470
03041 Spliceosome [BR:
cjf03041
]
131036470
03036 Chromosome and associated proteins [BR:
cjf03036
]
131036470
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
131036470
Spliceosome [BR:
cjf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131036470
Complex B
131036470
Complex C
U2 SnRNP specific factors
131036470
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
131036470
TFTC complex
131036470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
131036470
NCBI-ProteinID:
XP_057824355
LinkDB
All DBs
Position
7:212245158..212262085
Genome browser
AA seq
1212 aa
AA seq
DB search
MFLYNLTLQQATGVVCATYGNFMGGKTQEIVVARGKVLDLLRPDDNGKLQTILSVEIFGA
VRSLVQFRLTGSHKDYIVVGSDSGRIVILEYNKEKNIFEKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDNAARLTISSPLEAHKSHTIVYSISGVDCGFDNPV
FAAIELDYSEADQDSTGLAANEAQKHLTFYELDLGLNHVARKWSEPIDNGANMLVTVPGG
ADGPSGILVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHDNDQVSELKIKYFDTIPVTAAMCVLKSGFLFAASEFGNHALYQFQGI
GDDADVESSSASLMETEEGFQPVFFQPRGLKNLVKIDDIESLMPIMDTKVVNLFEEETPQ
IFALCGRGPRSSLRILRPGLAVTEMAVSQLPGIPSAVWTVKKSVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLLAEDSLMQVHPNGIRHIRADSRINEWKTPGKK
TIVKVGCNRLQVVIALSGGELIYFEMDMTGQLMEVEKREMSGDVACLDIAPVPEGRQRSR
FLAVGSYDSTIRILSLDPDDCMQILSVQAVSSPPESLLLLEVQASIGGEDGADHPASVFL
NAGLQNGVLLRTEVDMVTGQLSDTRTRFLGLRAPKLFSALVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETVMPLRYTP
RKFILHPKHKSLIIIESDQGAFTAEEREAAKKECLEAAGLGENGNMEIEQQNGDEEEKED
PLPDEQYGYPKAESKKWASCIRVLDPKSGETTCILALQDNEAAFSICSVNFHDKEHGTLV
AIGTAKDLEFWPKKNCSGGFIHLYKFVDDGKSLELLHKTPVDGVPLALCQFQGRLLVGIG
QVLRIYDLGKRKLLRKCENKLFPNTIVSIHTYGDRIYVGDIQESFHYTKYRRDENQLYIF
ADDCVPRWLTSSLHIDFDTMAGADKFGNVYLVRLPQDVSEEIEDDPTGGKIKWEQGKLNG
APNKVEEIIQFHVGDVVTSLQKASLIPGGGECLIYGTVMGSIGALLPFISREDVDFFSHL
EMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEI
LKKLEDIRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttataatttaacgctgcagcaagccacaggtgtggtttgtgcaacctatggc
aactttatgggtggaaaaactcaggaaattgtggtagccagaggaaaagtgctggacttg
ttacggccggatgataatgggaaactccagacaattctttctgttgaaatcttcggtgct
gttcggtctctggtgcaattcaggcttacaggttcacacaaggattacattgttgttggg
tctgactctggaaggattgtgatacttgaatataacaaagaaaagaatatttttgagaag
gttcaccaagagacctttggcaagtcaggatgcaggaggatagtccctggtcagtactta
gcggtggatccaaagggtcgagctgttatgatcggtgcctgtgaaaaacaaaaacttgta
tatgtcctgaaccgggataatgctgccaggcttaccatttcatcacctttagaagctcac
aaatctcacacgatagtgtactctatatctggtgttgattgtggttttgacaaccctgtt
tttgctgccattgagcttgattattctgaagctgaccaggattctactggacttgcagca
aatgaggcacagaagcatttgaccttttatgagcttgatcttggtctcaaccacgttgcc
cgcaaatggtcggagcccattgataacggtgcaaatatgcttgtcactgtacctggtggt
gcggatggtcctagtgggattcttgtttgtgctgagaattttgttatctacaagaaccag
gggcacccagatgttcgtgcagttattccaaggagagcagatttaccagctgaacgtggt
gtgttgatagtatcagctgcgacccacaaacaaaagtcaatgttcttcttcttgctgcag
actgagtatggagacatcttcaaggttactctagaacatgataatgatcaggtcagtgaa
ttgaagataaaatatttcgatacaattcctgtaactgcagcaatgtgtgttcttaagtcg
ggttttctcttcgctgcctcagaatttggaaatcatgccctctatcagttccagggaata
ggggacgatgcagatgttgagtcatcttctgcatcactcatggaaacagaagagggattc
cagcctgtcttttttcagcctaggggtttgaagaaccttgttaagattgatgacatagag
agcctcatgccaataatggacacaaaagttgttaatctctttgaggaagaaaccccacaa
atttttgccctttgtgggaggggtccccgctcctctttacgaatattaagacccggtctt
gctgttactgaaatggctgtgtcacagttaccaggtattcccagtgcagtttggacagtt
aaaaagagtgtaaatgacgagtttgatgcatacattgttgtttcctttgccaatgccact
ctggtgctgtctattggtgaaacagtcgaggaagttagtgacagtggatttcttgatact
actccttcattggctgtatctcttctagcagaggattccttaatgcaggtgcatcctaat
ggaattcggcacattagggcagattcacgtataaatgaatggaagacccctgggaaaaag
acaatagtaaaagtgggctgtaacagattgcaagtggtaattgctctcagtgggggagaa
cttatttattttgaaatggatatgacagggcaactgatggaggtggagaagcgtgaaatg
tcaggagatgtggcttgtttagatattgctccagttcctgaaggcagacagaggtcaaga
tttttggcggtaggatcatatgacagcactattcgcatattatctttagatcctgacgac
tgtatgcagattttgagtgtgcaggctgtaagttctccaccagaatctctactcttgctg
gaagttcaagcatctattggtggtgaggatggtgctgatcatccagctagtgtgtttctg
aatgctggtttacagaatggtgttcttcttagaaccgaggtggatatggtcactgggcaa
ctctcagacacacgtacaagattcttgggtttgagagccccaaaacttttttctgctctt
gtcaggggtcgccgggcaatgctttgtctttcaagcaggccttggttaggttatattcat
caaggacactttcttttaactcctctttcttatgaaactttggaatatgcggcttctttt
tcgtctgatcagtgtgctgaaggtgtggtagcagttgctggagatgcattgagagttttc
acgattgaaaggttgggagaaactttcaatgagactgttatgcccctgagatatacacca
agaaagttcattttacatcctaagcataaatctttaattattattgaaagtgaccagggg
gcatttactgcagaggaacgtgaagctgccaaaaaggaatgccttgaagctgctggatta
ggggagaatgggaacatggagattgagcagcagaatggggatgaggaagagaaggaagat
cctctacctgatgagcagtatggttatccaaaagcagagtcaaagaaatgggcatcttgc
atcagggttttggatcctaaatctggtgaaacaacatgcatcttggccctgcaggataat
gaagctgcatttagcatttgttctgtcaacttccatgacaaagaacatggaactcttgtt
gccattggaactgcaaaagatttagaattttggcccaaaaagaattgttcaggtggattt
attcatctctacaaatttgtggatgatgggaaatcacttgaacttctgcataaaacacca
gttgatggagtaccattggcattatgtcaattccaaggccgtctattggttggaattggg
caggtactgagaatttatgatttgggtaaaaggaaattacttcggaaatgtgagaataag
ctttttcctaatactattgtatccattcacacatatggggatcggatttatgttggtgac
attcaagagtcatttcattacacaaagtatcggcgagatgagaatcagctttacatattt
gcagatgattgtgttccgcgttggttaacatcttctttgcacatagacttcgatacaatg
gcaggtgcagataagtttggaaatgtttaccttgttcgtttgccacaagatgtatcagaa
gagattgaagatgatccaactggtggaaaaatcaagtgggaacagggtaagctgaatgga
gcaccaaacaaagtagaagaaataattcaatttcatgttggtgatgtggtgacaagttta
cagaaagcatctcttatacctggaggaggtgaatgtctaatctatggcactgtgatggga
agcattggggctcttctgccattcatctcaagagaagatgttgatttcttctcccactta
gagatgcacttgaggcaggaacatcctcctttgtgtggtcgagatcatatggcatataga
tcagcttactttcctgtaaaggatgttattgatggcgatctttgtgagcagtttcccact
ctacctcctgatttgcagcgcaaaattgcagatgagcttgatcgaacacctggagaaata
ttgaagaaattagaagatataagaaataagataatctaa
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