Cryptomeria japonica (Japanese cedar): 131036497
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Entry
131036497 CDS
T10556
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjf03036
]
131036497
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
131036497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
131036497
NCBI-ProteinID:
XP_057824377
LinkDB
All DBs
Position
5:757108650..757209262
Genome browser
AA seq
1785 aa
AA seq
DB search
MNTNTYSLSNTTYSEVALSLPLPNLPICFGANSEELALFEDGDGRAAKRSAVLAQAGKIA
ELLKSTDISYLSLREEVRNGKASISAEPGSVLSAVLQHDFEAFDYSTPGLVKERGFRNLS
SEKRSSAQNIHGGILSQSVSKGASTNIPEGVTSDVQEPMPLRKSRIRRKEASRDVADDSK
SGVTDLQDGGIEGLCELLDSHFERTEMPGENEGEEEGALLPLSEIKILSNEIMAAHSKNT
LHLVPVDSIVRLLNLLDRHIQHARDIAVDEEDDVDSDNFCIVMSALESVHIALAIMTHRH
MPKQVYNEEIIDRIINFSRQQILKAYDPSYRMIHKGRDPDVYRVDEDDDDDDTEYGPGKK
SRRKTKVLNRKLNPLNRVSGSVSSMLQKLCSILGLLKELLLIERLLDSSVLQLIKTSIAT
FAIDNIQLLQLKAIGVVCAIFSSYVQHRTIIMDEIFQLLWKLPSSKRSLRAYHLPDEDQK
QIQMITALLIQVVQCSVALPELRETASAEPDTAEHSNSPAKCFEPAAEACMHFWGTVLQR
WNSPKAQDGSDIKGVVENLVVDLLTTLNIPEYPAAGLLLQVLCLLLFGSVGLKCKDAVVR
GMAIDLLGQIAARLKHDAVACSNEKFWILQELVEDKSEVSGMQKQKCAICLEGKAAKFMI
HCDGCKRSFHGECIGVTGLDMLGRGWLCHCCLCRKQLSMLSSNSKGAVKNKEGNPKNSTR
QTAEVSPQISGFDVLQQILLNYLQEAGSTDDTSTFARRFYLCQWYRDDPNATQLLPYYHG
RWTSKAPVQDFGVAPLPLSRNAITKISAALGQQRSLARGFDKILDILLASLQENSPTPRA
KALRAVSAIVEADPGVLGDKRVKSAVEGRFLDSAISVREAAMELVGRHIASHPDVAVQYF
DKVSERIMDTGVSVRKRVVKIIRDMCMSKCEFKQAANACVRMISRINDEETSIQDLVCRT
FYELWFEESSDTQTQNVGDGSSIPLEIAERTEQLVDVLRRLHTHQALVTIIKRSLALDFC
PQTAKSIGTNAVQQAIVRKHCELMCQCLLERILQAEETNSEESEVRALPYVLALHAFCMV
DPTLCSPSSDPSRFVITLQPYLKTQADNRDVAQLLQSILFVIDTVLPLLRRPPQNFVEEL
ERDLKQMIVRYSFLTVVHACIKCLCSLGKVLIDGVKSFEYLVRRFYKHLEIYKARFEPKD
KLNVLRCLFCLGLLVRYGANMIPNNSEVNIVQILSLYKHYLCSDDFNIKVRSLQALGFFF
IARPEFMMEKDIGRILEAALSSGADTHIKIQALRNLYDYLVDIEEQMGIDDSGKSNKHGN
QPEVGRAVPVAAGAGDSNICGGIIQLHWNNILNRCLDLIDQVRQSALKLVEIVLRQGLVH
PITCVPYLIALEVDQQESNSKLAHRLLTHMNEKYPSFFESRLGDGLQLSFQFIQSGAFSS
IQAPNSSKGSANIKIKHDGSTSAAAKVGVSRIYKLIRSSRISRNKFLSSVIRKFDFGNWS
YSPLPFLMYCAEVLASLPFTLPDEPLYLVYAINRIMQVRAGSLESDMKALISNSPLGALV
KVTIETKEAEKDKEGGEEYNIECIETINNSSVDEDDTQGIPDVYIQKLKGDCYGAITLAL
LLKLKRHLKIVYSLNDARCQAFSPSEPIKSGEAFSKQNIPFSIKETPIEVPKTVSKMLAQ
YQEFKRLLKEDSIDYSTYTAQIPKKRPRAVASQTDTTKGVQTNGHLPARSLRAKIVTPSR
RINRAGSGESENEDDDYDDEDWAARGQKHRRFSNGGRGKGRKQSL
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgaatacgtatagcctctcgaatactacgtattcggaggttgcgctgtccttg
cccttgccgaatttgcctatatgcttcggagcaaacagcgaggagcttgctttgttcgag
gatggagatggccgtgcggccaaaaggtcagctgttttagcgcaggctgggaaaatagcg
gagctgttaaaatctacggatatcagttacttgtctctacgggaagaggttagaaatggc
aaagcttcaatttcagctgagccagggtctgttctttctgctgttcttcaacatgatttt
gaggcatttgattattccacaccaggtcttgttaaggagcgtggtttccgaaatttgtct
tctgaaaaaaggtcttctgcacaaaatatacatggtggaattctatcacaaagtgtttct
aagggggcttcaacaaatattcctgaaggagtgacctcggatgtgcaagagcctatgcct
cttagaaaatccagaataagaagaaaagaggctagcagagatgttgcagatgatagcaag
tcgggagttactgatcttcaagatggtggcattgaaggcctttgtgaactgttggacagt
cattttgaaagaacagaaatgcctggggaaaatgaaggcgaagaagagggtgcattgttg
cctctatcagaaatcaaaattctctcaaatgaaattatggctgcacattcaaagaatacc
cttcatctggttccagttgacagtattgtgagacttctaaatctgcttgatcgacatata
cagcatgctcgtgacatagctgttgatgaagaggatgatgttgattcagataacttttgt
attgttatgtctgcattagagtcggttcacatagctctagcaataatgacgcatcggcac
atgcctaagcaagtttataatgaagagatcattgacaggatcatcaacttctcaagacaa
cagatattaaaagcatatgatccttcttatcgaatgatacataagggtagagaccctgat
gtttacagggttgatgaagatgatgacgatgatgatactgagtatggaccagggaaaaag
agccgtcgtaagactaaagttttgaataggaaattgaacccgttgaacagggtttctggt
tctgtatcctccatgcttcagaaattgtgcagtattcttgggcttttgaaagaactgctg
ctaattgagcgccttcttgacagttctgttctacaactgataaaaacaagcattgctaca
tttgccattgataatatacagctattgcaattgaaggctattggcgtagtatgtgcgatt
ttcagctcatatgtccagcaccgtaccatcataatggatgaaatctttcagctgctttgg
aaattgccgtcatccaaacgtagtctcagagcttatcatttaccagatgaagaccagaag
caaatccagatgataacagccttgttgattcaggtggttcaatgtagtgttgctctacct
gaactacgtgagacagctagtgctgaacctgacacagctgaacactctaatagtccagct
aaatgttttgaacctgcagctgaggcttgcatgcatttttggggaactgtactccagcgg
tggaattctccaaaagctcaggatggatcagacattaaaggagttgttgagaatcttgtt
gtagatttactgacaacgttgaatatacctgaatatccagctgctggacttttactacag
gttctttgtcttctactttttgggagtgtgggattgaagtgtaaagatgctgttgtacgt
ggaatggcaatagaccttcttgggcagattgctgcaagactaaagcatgatgctgtagct
tgcagtaatgagaagttttggattttgcaagaattggtagaagataagtctgaagtttct
ggaatgcaaaaacagaagtgtgctatttgtttagaaggaaaagctgcaaagtttatgatt
cattgtgatggatgtaagagatcatttcatggtgagtgcatcggtgtgacgggattggat
atgctgggtcgtggctggctttgccactgttgcctttgcaggaagcaactttccatgctt
agttctaactcaaaaggagctgtcaaaaataaagaaggcaatccaaaaaacagtacaagg
caaacagcagaagtttcacctcaaatttcaggattcgatgtccttcagcaaattctttta
aactatctgcaggaagctggatccacagatgatacatctacttttgctcgaaggttttat
ctatgtcagtggtatagagatgatcctaatgcaacacagttgcttccctactaccatgga
aggtggacttcaaaagctcctgtacaagattttggagttgctcctttgcctttgtctagg
aatgccattacaaagatctcagcagcattaggccaacagagatcacttgctcgtgggttt
gataaaatacttgatatattgctggccagcttgcaagagaattcaccaactccgcgtgcc
aaggcattacgtgcggttagtgcaattgtggaagcagatcctggagtattaggtgataaa
cgtgttaagtctgcagtagagggcagatttcttgattctgcaatttctgtacgagaagca
gccatggagcttgttggtcgacatatagcctctcatcctgatgtagctgtacagtatttc
gacaaagtttcagagagaattatggacacaggagtaagtgttcgtaagcgggttgtgaag
attattcgggacatgtgcatgtccaagtgtgagttcaagcaagcagcaaatgcttgtgtt
cgtatgatctctcgtatcaacgatgaagaaacaagtatacaggaccttgtttgcagaacc
ttctatgagctgtggtttgaagagtcttctgatacacaaactcaaaatgttggggatgga
agtagtataccactagaaatagcagagcgaacggaacagttagttgatgtgctgagaagg
ttgcacactcatcaggcattggttaccatcattaagcgcagtttggctttagacttctgc
cctcagactgcaaaaagtattggtacaaatgcagttcaacaggccattgttcggaaacac
tgtgaactaatgtgccagtgcttattagaacggattttgcaggcagaagaaacaaacagt
gaagaatcagaagttcgggctcttccatatgtgttggcattacatgcattttgtatggtg
gacccaactttatgttctccttcatctgatccttcacgttttgtgatcactcttcagcca
tatctgaagacccaggctgataatcgagatgttgcacagctgcttcagagtattcttttt
gtaattgatacagtcctccctttgcttcggagacctcctcagaattttgtggaagaattg
gaacgggatttgaagcaaatgatagttcgctattctttcctgacagttgtgcatgcttgc
ataaagtgtctttgttcccttggtaaagttcttattgatggtgtgaagtcatttgagtat
ctcgtgagaaggttttataaacatttagaaatttacaaagcacggtttgagcctaaagac
aagttgaatgtactacgctgtcttttctgtctcggccttcttgttcgctatggagcaaat
atgattccaaataacagtgaagttaacatagttcaaattctctctctatacaagcattac
ctgtgttcagatgattttaatattaaggttcgatctctacaggcactaggattctttttt
attgctagacctgaattcatgatggagaaggatattgggagaattttagaggctgccttg
tcatctggtgctgacacacacataaagattcaagcgttacgcaatctctatgactatcta
gttgacattgaggagcaaatggggatagatgattctggaaagtctaataaacatggtaac
cagcctgaggtgggtcgtgcagtacctgttgctgctggagctggtgatagtaacatttgt
ggaggaataatccagttacattggaataacatattgaacagatgcttggatttgattgat
caagttcgccaatccgccctgaagcttgtggagattgtacttcgtcagggtctggtccat
ccaatcacatgtgtaccatatctgatagctttggaagttgatcaacaagagtcaaactcg
aagctggcacatcgcttattaacgcatatgaatgagaagtacccttctttttttgaaagc
cgattgggtgatggtcttcaattgtctttccaatttatccaatcaggtgctttcagttcc
attcaagcacctaattcaagcaagggatcagcaaatataaaaattaagcatgatgggagc
acatctgctgctgcaaaagtgggagtttctcgtatatataagctcatacgcagtagccgt
atttcaagaaataagtttctgtcatctgtgatacgtaaatttgattttggaaactggagc
tattcaccacttccatttctaatgtactgtgctgaagttcttgcttcacttcctttcacc
ctacccgatgaacctctctacctagtttatgcaatcaatagaatcatgcaagtaagagca
ggaagcttagagtctgacatgaaggctttgatttcaaatagtcctttgggagctctagta
aaggtcactattgaaacaaaggaggctgagaaagacaaggaaggtggagaagaatataat
attgaatgtattgagacaatcaacaattcatctgttgatgaagatgatactcaaggcatt
ccagatgtatatatacaaaaactgaagggtgattgctatggtgccattaccttggcattg
ctgttaaagttgaaaaggcacttgaaaattgtttatagcttgaatgatgcccgttgtcag
gctttctccccttctgagccaataaagagcggagaagctttttcaaaacaaaacatacca
tttagcatcaaggaaacccccattgaggttccaaagactgtctctaaaatgcttgcacag
tatcaggaatttaaaaggctgctgaaggaagattctatagactattctacatacacagct
caaatacccaaaaaacgtcctcgcgctgtagcttcacaaacagacactactaaaggagtt
cagacaaatggtcatctacctgcaagaagtctcagagcaaagattgttacaccctcacgt
agaattaacagagctggttctggtgaaagtgaaaatgaggatgatgactatgatgatgaa
gattgggctgctcgagggcagaaacatcggagatttagcaatggtggaaggggaaaaggg
aggaagcaatccttgtaa
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integrated database retrieval system
