Cryptomeria japonica (Japanese cedar): 131036745
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Entry
131036745 CDS
T10556
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04142
Lysosome biogenesis
cjf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
131036745
04148 Efferocytosis
131036745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131036745
Membrane trafficking [BR:
cjf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
131036745
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
ANAPC3
VPS18_solenoid_2nd
TPR_WDR35
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
131036745
NCBI-ProteinID:
XP_057824699
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All DBs
Position
3:1006360059..1006514110
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AA seq
1035 aa
AA seq
DB search
MVHNAYDSFQLVKGCPAKIESVGVWGCRVLVGCIDGSLRIYAPESLSISSNSNISRREIP
SDGGSGIIEAEPYVLERTLVGFCKKAVICMDVLQSRSLLLSLSDAITLHRLPGFEVAVYI
GKTKGSSSYAWDDKRGFLCVNKQKKLLIYRYDGSREFAEMKEFAVPDVVKSMAWCGEGLC
LGIRREYVILNTVTGAFFEVFPCGRIAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEG
RICWSEAPVSVAIHLPYAIAQLPRHIEIRSLRAPYPLVQTYPLRDVHLLLSSSNCVVAAL
ENSAYCLLPVPIGAQVVQLAASGNFDEALALCKLLPPEDSTLRASKEDSIHIRYGQYLFD
NGSYEEAMQQFLASSLDISAILCLYPSLKLPKNSNDTSSKYMFESSSDMLYEQHLAKTFS
NASDEAESGSLSQDEDKCKSSSGKLNHNSLSALIKFLSKRRKRIIGKAAAEDTDEVVAAV
VEDASSSVNSWRSSSSVKHSSNTKGGRSAREKATILDTALVQCLLLTGQSSGALELLSGP
NYCDVKICEEFMLQRGHYLELIELYKYNERHRDALKLLNHLVAGSDSLPVPPADTQKLGP
ESIIEYLKPLGGLDPALVLDCSTWILEACPQQTIELFSSTDPPLPPNLVSSYLKQHAPHM
QVTYLEHMLALHGNALSSSLQNELVQIYLVKVLDEYAELKGQEKWDERQNSIARQKLLAA
LEKTSGYNAELLLKRLPPDALYEERAFLLGKMERHQLALTLYAHKLREPELALGYCDLIY
NTATSVMSGKNTSSLATSQQRHSGQRAALNIYLTLLQVYLNPQASKKEFDQTIAVLNSSK
EPATYKIGSAQKAKGHKSKKVVEIIERIEDNRQSLSSTSTDSAPESGRSDGEESFEASTN
VEGMMLDEALNLLSRRWDRINGAEALRLLPSDIKLQLLLPFLEPLLKKSSEARRNLSVIK
SLRHSENLQVKDELYKSRQRFVKINGESICSLCNKRIASSVFAVYPNGTTVVHFVCFRDS
QTVKVVTTAPSMRTS
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacaatgcctatgattcatttcagttagtgaagggttgtcctgccaaaattgaa
agtgttggggtatggggatgccgtgtattggttgggtgcattgatggctccctcagaata
tacgctccggaatcattatcgatcagtagcaatagtaatattagtagaagagagatcccc
tctgatggcggcagcggcatcattgaagcggaaccatacgtgctggaaaggactttggtt
ggattttgcaaaaaggcggtcatatgcatggatgtcctgcagtcgcgaagcttgctgctc
tcactttcagatgccataacacttcatcgcctgccaggctttgaagtagctgtctacatc
ggaaagactaagggttcctcttcttacgcttgggatgataaacgcggtttcctttgtgtc
aacaaacagaagaaattgctcatctatcggtatgacggtagccgagagttcgcggaaatg
aaagaatttgctgtaccagatgtagtgaagtcgatggcatggtgcggagaaggcctatgc
ttgggaatcaggcgggaatatgttatattgaatactgtaactggtgccttttttgaggtg
tttccctgcggcaggatcgctccacctttagttgtttctcttccttccggggagttactc
ttaggcaaggataatattggagtctttgtagaccagaatggtaaactactacaagaagga
aggatatgctggtctgaggcacctgtctctgttgctattcatttgccatatgctattgct
caactaccacggcatattgagatcagatcactaagggctccttatccattggttcagaca
tatcccctccgggatgttcatcttcttctgtcaagtagtaactgtgttgttgctgcatta
gaaaattctgcttactgtcttcttccagtcccaattggtgcacaggtagtacagctagca
gcatctgggaattttgacgaggcattggcattatgtaaattacttccaccagaagactct
acacttagagcatctaaagaagattccatccatatcagatatggccaatatctttttgat
aatgggagctatgaggaggcgatgcaacaatttttggcatcttcactggatattagtgca
atattatgtttatatccttcattaaaacttccgaagaattctaatgacacttcatccaag
tacatgtttgaatcttcttctgatatgttgtatgaacaacaccttgctaagacattttct
aatgcatcggatgaggctgaaagtggatccctatcacaggatgaagacaaatgtaaatct
tcaagtggaaagctaaatcataattcacttagtgctcttatcaaatttctgtcaaaaagg
agaaaacgtatcattggaaaagcagcagcagaagacacagatgaggttgttgcagcagta
gtcgaagatgcaagttcatctgtgaattcctggaggtcaagcagttcagtcaagcatagt
agtaataccaagggaggcagaagtgctcgagaaaaggcaacaatattagatactgctctt
gttcagtgcttactgctcacaggacagtcttctggagcactagaacttctcagcggtcca
aattattgtgatgtcaagatttgtgaagagttcatgctgcaaagaggccattacttggaa
ttgatagaactgtataagtataatgaaaggcacagggatgctcttaagcttctcaatcat
ctagtcgcaggttcagattctcttcctgtacctcctgcagacacacaaaaacttggacct
gaatcaattatagaatacttgaagccacttgggggtcttgatcccgctcttgtgctagac
tgttcaacgtggattcttgaagcttgtccccaacaaacaattgaattattctcatctacg
gacccgcctctccctccaaacttagtgagttcataccttaagcaacatgcaccacacatg
caagttacatatttagagcacatgcttgccctgcatggaaatgcactttcttctagcctt
cagaatgagttggtgcaaatttaccttgtaaaagttcttgatgaatatgcagaattgaaa
ggtcaggaaaaatgggacgaaagacaaaattccattgctaggcagaaactcttagctgct
ctggagaaaacttctggttataatgctgagctcttattgaaacgtcttccacctgatgct
ctttatgaagagcgtgcctttttgttaggaaaaatggaacgacatcaacttgccttaaca
ctgtatgcacataagcttcgtgaacctgagcttgcattgggttattgtgaccttatctac
aatactgctacctcggtcatgagtggtaagaacacaagtagtctagcaactagtcaacaa
cgtcactcaggccagagagcagctctcaacatctatcttacactactgcaagtctatctc
aaccctcaagcatcaaaaaaggaatttgatcaaacaattgctgttcttaattcatcaaag
gaaccagcaacttataaaattggttctgcacaaaaagcaaagggacacaagtcaaaaaaa
gttgttgaaataatagaaagaattgaagataatagacaaagtcttagtagtaccagcact
gacagtgctccagaaagtggacgaagtgatggagaagaatcatttgaagcctcaacaaat
gttgagggaatgatgctggatgaggcattgaatctcctgagcagaagatgggaccgtatc
aatggtgctgaggccctccgcttgctaccttcagacattaagttacagctgttacttcca
tttctggagccactactgaaaaaatcaagtgaagctcgccgcaatttgtcagtcataaaa
agcctccgccatagtgaaaatttgcaggttaaagatgaactctataagagtagacaacga
tttgtgaagattaatggtgaaagtatctgttctttgtgtaataagcggatagcaagcagt
gtatttgctgtttatccaaatggtacaactgtggtgcactttgtttgtttccgagattct
cagactgtcaaggttgtcactaccgcaccaagcatgagaacatcctaa
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