Cryptomeria japonica (Japanese cedar): 131036830
Help
Entry
131036830 CDS
T10556
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131036830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131036830
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131036830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
RT_RNaseH_2
AAA_29
Motif
Other DBs
NCBI-GeneID:
131036830
NCBI-ProteinID:
XP_057824806
LinkDB
All DBs
Position
3:complement(802719547..802825605)
Genome browser
AA seq
1132 aa
AA seq
DB search
MKGQSSISSFFSKSAEKPPKPKQNPNANFKQLSYLEMLERRQEKPIQFSQLQHKFSLPGA
PSSSVEGLPSDLPEAQAIKTPLGNRERSLVAENEDSPLHALQKTPFKTPPNKGVIEFDSD
KCSGVQRKRELYAYEKTFEDRLLAVQNDVAADFDWPDTPAVQPFVPRNKRILEDNSEVTR
CQELLPASDPNKRRKLIEVLGEDGLEHGGAWEKSKSKFEFLDPSVIRDAKLRRPSDPLYD
KRTLHIPKDVLDKMSASQKQYWTTKCQYMDTILFFKVGKFYELYEVDAEIGQKEFDWKMI
ISGVGKCRQVGVPESGIEEAILKLLERGYKVGRMEQLETTEQAKAKRGSTATVQRELVHI
STPSTAIHENLKAEAVHLLALKEETFDRANDCSVAFGFAFVDAAACQFFVGSMSDDSSRS
ALGALLMQVSPRELLYEIGGLSKETQKALKKYTSLGSVALELTALQPGLDFTDSSAVFKL
IQSKGYLKGSGTTSWYAAIESTTHENLVSSALGGLVIHLHRMKLDDDLLCNGAVCPYQVY
KGSLRLDGQTLSNLEIFNNNANGSDEGTLFKYLDHCTTSFGKRLLRRWICHPLRNVQDIN
YRLDAVEELISRPEIAVCISERLRKLPDLERLVARIRGSAGTLSAGLGPLVGPKKIKQRV
KTLAAAVKGLRDGMDLLKVLHIGDQDGPPKTHLLWETSTMRNTIQLNQILDQIELIIEEK
LPFDVKFPKQDKDLGEDGVESLNSIENLFTQEIAHWSRIVDATSCIDVLVAFARSANSSN
GTTCRPVLVSVQENDSILDGGKKVSILSMKGLWHPYGMGGQGSQPVPNDIELGNERAYGC
PRAMLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCESCILSPADVIFTRLGASDRIMSG
ESTFLVECMEAASVLRYATPYSLVVLDELGRGTSTFDGYAIAYAVFRHLVETKDCRLLFA
THYHPLTKEFASHPCVRLMHMSCSFEAKSTCVDYTGVSNSQSEKAITTDNSLNLDFFDTE
RHLVFLYKLRSGASPESYGLQVALLAGMPRSLVKAAFDASQVMKSWLSSSFDSSEQRAEF
STLHEQWLRTVLATPDDKSLHNNLDFTAEDAYDNLLCVWHELQNFSQQSAKP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggccaaagttcgatcagttctttcttttcaaagtccgctgaaaaaccccctaaa
cccaagcaaaaccccaatgcgaattttaaacaactttcctacttggaaatgttggagcgt
cgccaagaaaaaccaattcaattttctcaacttcagcacaagttttccctcccgggggct
ccgtcttctagtgtggaagggttaccgtccgatttaccggaagctcaggcgatcaaaacg
ccgttagggaatagagaacggtctcttgttgcagaaaatgaagattcccctcttcatgcc
ttgcagaaaaccccgtttaaaactcctccgaacaaaggagtaattgaattcgacagtgat
aaatgttccggcgtgcaaaggaagcgtgaactatatgcttatgagaaaacatttgaagat
cggttattggctgtgcaaaatgatgtagcagcagattttgattggccagacacacctgct
gtgcaaccttttgtacccagaaataaaagaattcttgaagacaattcggaagttaccagg
tgtcaggagcttttacctgcctcagatcctaacaaaagaagaaaactaatcgaagtatta
ggggaggatgggctggagcatggaggagcctgggaaaaatcaaagtcaaaatttgaattt
cttgatccttcggtcataagggatgccaaactaaggaggccaagtgatcctttgtatgat
aaaagaactctgcatattcccaaagatgttttagacaaaatgtcagcatctcaaaaacag
tactggacaacaaaatgccagtacatggatactatactattttttaaagtgggcaagttt
tatgagctctatgaggtggatgctgagattggccagaaggagtttgattggaaaatgatt
attagtggtgttggcaagtgtagacaggttggtgtccccgaaagtggaattgaagaggct
attctgaagttgcttgaacgggggtacaaggttgggaggatggaacaacttgaaactaca
gagcaggcaaaggcaaagaggggttccacagctacagtccagcgagagctggttcatatt
tcaacaccgtcaacagcaatacatgaaaatttaaaggctgaagcagttcatctccttgcc
ttgaaagaggaaacgtttgatagggcaaatgattgttcagtggcatttggttttgccttt
gttgatgctgcagcttgtcaattctttgttggttcaatgtctgatgattcgtctcgttct
gctttaggagctttgcttatgcaagtatctcctcgggagctactatatgagattggagga
ctctccaaagagactcaaaaggcactaaaaaagtacacaagtttaggatctgtggctttg
gagttgactgctcttcaaccaggcttggatttcacggattcttctgcagtgttcaagttg
atccagtcaaagggatatttgaaaggatctggtactacatcatggtatgctgcaatagaa
agcacaacccatgaaaatcttgtctcaagtgcccttggaggattggttatacatttgcat
aggatgaagctggatgacgatctactttgtaatggggctgtttgtccttatcaagtctat
aagggctcacttcggcttgatggtcaaactctttcgaaccttgagattttcaataataat
gcaaatggaagtgatgaagggacacttttcaagtatcttgatcattgtactacttctttt
gggaaacgtcttctgagacgttggatttgccatcctttgagaaatgttcaagatattaat
tataggcttgatgctgtggaggagctcattagtcggccagaaattgcggtttgtatttca
gaaaggttacgaaaattaccagatcttgaacgacttgttgcccgtattaggggatcagca
ggcacattatctgctggcctggggcccttggttgggccaaaaaaaattaaacaaagagtt
aagacacttgccgctgctgtcaagggactgcgagatggaatggacttgctaaaggtcctt
cacattggagatcaggatggacctccaaagacacatttgctttgggaaacatcaaccatg
agaaatacaattcagcttaaccaaatacttgatcagattgaattgataatagaagagaaa
ctgccttttgatgtgaaatttccaaagcaggataaggatctcggtgaggatggggttgaa
agtttgaattcaattgaaaacttgttcactcaagagatagcacattggtcacgaattgtt
gatgccacaagctgtattgatgtgctggtagcctttgctagatcagcaaactcatcaaat
ggaactacatgcagacccgttcttgtttctgtccaggaaaatgatagtattttagatggt
ggaaaaaaagtttctattctcagcatgaaagggttatggcatccttatggtatgggaggg
cagggaagtcagccagttcccaatgatatagaacttgggaatgagagagcatatggttgt
ccccgtgcgatgcttctaacgggaccaaatatggggggtaaatcaacactcttgcgtgct
acctgtctggcagtgataatggctcagctcggttgctatgtaccatgtgaatcatgtatc
ctgtcaccagcagatgttatttttacacggctgggtgcaagtgaccgcataatgtcagga
gaaagcacatttctagttgaatgcatggaggcagcatcagtattgcgatacgcaacacca
tactctcttgtagtgctagatgaacttggtcgaggaacatctacatttgatggatatgcg
attgcatatgcagtttttcgacatctggttgaaacaaaagattgtaggttgctcttcgcc
acacattatcatcctctaactaaggagtttgcttctcacccttgtgttcgtctaatgcac
atgtcatgttcatttgaggcaaaatccacatgtgttgattacacaggggtgtcgaattcg
cagtctgagaaagcaatcacaactgacaacagtcttaatttggatttctttgacaccgag
aggcaccttgtctttttgtataagctaaggtctggtgcatccccagaaagctatggcctg
caagtagccttacttgctggaatgccaagatctctggtcaaagcggcattcgatgctagt
caagtcatgaaatcctggctttcaagcagttttgattcaagtgagcaaagggcagagttt
tcaactttacatgagcagtggttgaggactgtgttagcaactccagatgataaatctctc
cacaacaacttggactttactgctgaggatgcatatgataatttgctgtgtgtgtggcat
gaacttcagaatttctcacagcaaagtgctaaaccgtaa
DBGET
integrated database retrieval system
