Cryptomeria japonica (Japanese cedar): 131037203
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Entry
131037203 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131037203
03420 Nucleotide excision repair
131037203
03430 Mismatch repair
131037203
03440 Homologous recombination
131037203
03460 Fanconi anemia pathway
131037203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131037203
03032 DNA replication proteins [BR:
cjf03032
]
131037203
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131037203
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131037203
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131037203
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131037203
MMR (mismatch excision repair)
131037203
DSBR (double strand breaks repair)
HR (homologous recombination)
131037203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
Arc_PepC
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
131037203
NCBI-ProteinID:
XP_059068657
LinkDB
All DBs
Position
2:54786259..54788595
Genome browser
AA seq
593 aa
AA seq
DB search
MASPAASQQPSTETSEVEQHLQLTPHALLCINAGDDVPSPLLQLLSFEKLIDDENDNARY
KVVLSDATHMQLAILPPEYSGLLLSETLKIGTILSLTAYACRNVWNSRTIIIFSLAVKFT
NSPLLGKPRYLFKEQEQQMLGRDTPATTRRSLKFGIHLPPVQHESSVNISSIKALNPFQN
KWTIKGRVTNKRKMHQYSTPKSTGQVFSFDMIDSEGTEIRITCFGDVAEMHYHRVEPGTY
YTVSKGCVKEANTKWNKLNNHLEITLDNNSILKRCDDVVECEANNSQFTPINEITYCTNN
TLVDVIGIVVAVGEPSLIRKKDGSEVTKRIVKINDASTFTIDVNLWGETWQGLVRNAHVG
YFNGKVVNTTTATTLNINPSIPEIETLMSRGKISDALLPLSCVAGQLNSQYSRMTITAVL
ERTSVLSETVESTIRAVVRIIKTDSFCYPACPLKFNGKECKKKCTQQSDNQWFCSRCQTA
VPECNYKYLLQMKLQDHTRALWATAFDEVGTNILQISAKELYMLQYDLTTQKTPQSIIKH
VLLSSFVFTLSITTDMYNSEPRLKAMITKVAKIDYQAESALLLAEIARMTTTA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgctgcctcgcaacaaccttctacagaaacttcggaagtggaacaacat
ctacaattgaccccacatgcactgctctgcatcaacgctggggatgatgtcccctctcca
ctgcttcagcttttgtcttttgaaaaattgatagacgatgaaaatgacaatgcccggtat
aaggttgttttgtctgatgccacacacatgcaattggcgatcctcccacctgagtatagt
ggtttgctgctttcagagacattaaagattggcactatcctatcattgacagcctatgct
tgtagaaatgtttggaactcaaggactataataatattcagccttgctgtcaaatttacc
aattctccattgcttgggaaacctagatatctgtttaaagagcaagaacaacaaatgttg
ggtcgagacacacctgccacaactagacgatcccttaaatttggaattcacctcccacct
gtgcagcacgaatcttctgttaatatcagctcgattaaagccttgaaccccttccaaaat
aaatggacaataaaggggcgtgtgacaaacaagaggaagatgcatcaatacagtacacca
aagtccactggccaagtatttagctttgacatgatagatagtgaaggtactgaaattaga
ataacttgctttggcgatgtagcagaaatgcattatcatagggttgaaccaggaacatat
tatactgtgtcaaaaggttgcgttaaagaagctaacactaaatggaataagcttaacaac
catcttgagataactttggacaacaattcaatattgaagcgttgtgatgatgttgttgaa
tgtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaac
actttagttgatgttattggtattgtagttgctgttggagaaccctcattaattcgcaag
aaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcaacttttact
atcgatgttaacttatggggagaaacatggcaagggctagtcagaaatgctcatgttggt
tatttcaatggaaaggtggtcaacacaaccacagcaacaaccctaaatataaacccttct
atacctgaaatagagacacttatgtcaagaggaaagatttcagatgcccttttaccgcta
tcatgtgttgctggccagcttaactcacaatacagtaggatgacaatcacagctgtttta
gagcgtacaagtgttctctctgaaacagttgaaagtactattagggctgttgtgagaatc
attaaaactgattctttttgctatccagcctgccctttgaaatttaatggaaaagaatgt
aaaaagaaatgcacccaacaaagtgataatcaatggttttgttcaagatgtcaaactgct
gtgccagaatgcaattacaaatacttattgcagatgaagctccaagatcatacaagagct
ctttgggctactgcctttgatgaggttggcacaaatatactgcaaatatctgccaaggag
ctttacatgctgcagtacgatttgactacacaaaaaacccctcagtccattatcaagcat
gtccttttgtcttcctttgttttcacactctctattacaacagacatgtacaattcagaa
cccaggctcaaagcaatgataaccaaagttgccaaaattgattaccaggctgaaagtgct
cttctgcttgcagagattgctcggatgactacaactgcatag
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