Cryptomeria japonica (Japanese cedar): 131037242
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Entry
131037242 CDS
T10556
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131037242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131037242
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131037242
mRNA degradation factors
5'-3' decay
Decapping complex
131037242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WD40_Prp19
DUF445
Beta-prop_EDC4L
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
131037242
NCBI-ProteinID:
XP_057825296
LinkDB
All DBs
Position
5:complement(656404810..656432111)
Genome browser
AA seq
1391 aa
AA seq
DB search
MGSAANNNNPGGYDMQNLFKPGNPVNLAPPAQIQYPFLHAYGNPSNFPYQTPAPSSAPFP
FPPSMYQNNNNPSYMNYSQAPTQFRLNHPSPSDAARLMSLIGNNHSSPSSMELSTPALTS
STSSSASSSEPPFPQAFAPTAPPVNLASPQRTPSRLLSTKLPRGRHLHGDHVVYDIDLRL
PGEAQPQLEVSPITVYGSDPDLVGGRQIAVNRNYICYGLRTGTIRVLNINTALRALLRGH
SPRVIDMAFFSSDVHLLVSSSSDGRIFIRKIEEGVGDDDKHQITEKIVLGIQILGEWESV
YPRVCWHPQQQDVLFVGVGNYVLKIDVAKTRSASPGGGFSTEDPLKFQIESLIEGVYCIG
KHEDDVTDLSICHWSVTCLASASKDGMVKIWGDKKMVPLAALKPHNGRAVGAVGFLDIPN
SPDNIVLFTAGPLNQELKLWVSANPEGRFSPSSGKWHCIQTLELKSSSETRNEDAFFNQV
LVVARASVILLANAKRNAIYAVHVECNSKPAATRMDYLAEFSVAMPILSFTATIENVADG
EGTVQIYCVQTQAIQQYALEMSQCFPPPIELASSEEDAVSRVFERSTSSTFVRSDSCHGN
DLGEMIGSSGMKSPRPINIPEASISQSPVYPSTPHAHGHLAVSCGDTTFGLSTPSNIPTD
NAPLSSQVPVPLSPRLSRRLSGTKSPVQIFKQDISPISSGDPSDSQTVQEHPIERKSDAV
MTTISDMASVDVISTCKGDDRFGAKEREVQGSQCLSSTIADDCEAGSSQSYLITPSQLMS
MVLPSDSDKGSDINNEIEETGAKRENENPKVVKKKVDKSSPSNVERAHSEKGTGKVSIQI
DSQASEPSNKISREISSLPKNEVTVEEVQPEGDNEVFEDREHSPNVSIEESQENIKDISC
KMPVVPSTSATSQSSSGNRRRKNKNKNIPTLPSSPSGTPFTSVGSSDGEPSNSMIIPSPE
NLAAQVVAMQETLSQLVTMQKELPKQMASAISTPVTKEGKRVEAAISQRMEKFLKAQMDS
LWTRIQEENLKRERSERQLTALLTNILNKELPATIDRILKKEVSSLGTSIARLITPNLEK
AISTSISDAFQKGVNDKALSMLEKSLGAKLESAVLRQIQTQFQSSGKQIMQDALRICFEG
SVIPAFENSCKAMFEQVDTAFRKGMSEHTTAAQQQFSVSHSALASTLQDTVASASSLAQS
LKAELADGQRKLLALAESAGASSSRVGTLITAKSNGSLGLPDKAISLEHLEESLDPTKEL
SRLVSECKFEEAFNKALKMNDVPLVSWLCSQVDPQTLFTMVPLPLSQGVLLALVQQLGYD
LEKDFGRKLVWIKEACTVLNPSDPLLAPHMRPILTQVYPNLHQKMLNSSGAEASTLRLVL
HVFNSLLSTCK
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgggttctgcggcaaataacaacaatccaggaggctatgacatgcaaaaccttttcaaa
ccaggaaaccccgtcaatttagcacctcctgcacaaattcagtacccattccttcacgct
tacggtaaccctagtaattttccctatcaaactccagcaccttctagtgcaccgttccct
tttcctccttccatgtatcaaaacaataataatccttcttatatgaattattcccaggct
cccacgcaattcaggttaaaccatcccagtccttccgacgctgcaagactaatgtctttg
atcggtaataaccactcttcgccaagctccatggaattatctactccggctctcacatca
tcgacatcgtcctccgcttcctcatcggagccgccatttccccaggcttttgcaccaaca
gcccctcccgtcaatctggcttctcctcagcgtaccccaagcaggctattgagtactaag
ctgcccagagggaggcatctccacggagaccatgttgtgtatgatatcgatcttcgcttg
cctggtgaagcacaacctcagcttgaagtttcacccattactgtttatggttcagaccct
gatctggtgggagggcgtcagattgctgttaacaggaactacatttgctatggcctacga
actggtactattcgggttcttaacataaacactgcactcagggcattgcttcgaggacac
tcaccgagggtgattgatatggccttcttttccagtgatgtgcatctcttagtcagttca
agttcagatggaagaattttcatacggaaaattgaggaaggggtaggagatgatgataaa
catcaaataacagaaaaaattgttttgggcatccagatccttggggaatgggaatctgtc
tatcctcgtgtctgttggcatcctcagcagcaggatgttttgtttgtgggagtcggcaat
tatgtgctgaaaattgatgttgcgaaaacaagatctgcttcacccgggggtgggttttca
actgaggatcctcttaaattccaaatagaaagtctaattgaaggtgtttattgcattgga
aaacatgaggatgatgttacggatttgtccatatgtcactggagtgtgacctgtttagcc
tcagcatcgaaggatggaatggtgaaaatatggggagataagaagatggttccacttgca
gcactaaagccacacaatgggcgagctgttggtgctgttggatttcttgatataccaaat
tctccagataatatagtccttttcactgcgggccctctgaatcaagaattgaaactgtgg
gtttctgcgaatccggaaggtcggttttctcccagttctggaaagtggcattgtatccag
acccttgaacttaagagctcatcagagacaaggaatgaagatgcattttttaatcaagtc
ttagttgtggcccgtgccagtgtgattttactggcaaatgcaaaaaggaatgcaatttat
gcagtacacgttgaatgtaattccaagcctgcggccacccgcatggactacctggcagaa
ttttctgtagcaatgccaattttgagctttacagctacaattgagaatgttgctgatggt
gaagggactgttcagatatattgcgttcaaacacaggccattcaacagtatgctctggaa
atgtcacaatgctttccacccccaatagagcttgcatcttcagaagaggatgctgtatca
cgtgtttttgagagatcaacttcgtctacttttgtgagatcagattcttgtcatggtaat
gatttaggagagatgataggtagttctggaatgaagtcaccaaggccaatcaatatacct
gaggcttctataagtcagagccctgtttacccctcgactcctcatgctcatggccacctt
gcagtgtcatgtggggatactacatttggcctttcaacaccttcaaatattcctactgat
aatgcacctttgtcttctcaagttcccgttcctttgagtccaagattgtccagaagatta
tctggaacaaagagtccggtgcagatttttaaacaggacatctctccaataagttctgga
gatccatctgatagtcaaacagttcaagagcatcccattgaaaggaaatctgatgctgtt
atgactactatttctgatatggcttctgtggatgttattagtacatgcaaaggagatgac
aggttcggtgccaaggaaagagaagtgcaaggtagtcagtgtttgagttctacaattgca
gatgattgcgaagcgggctccagtcaatcatacttgataactccttctcaactcatgtct
atggttttgccttctgattctgataaaggatcagatataaataatgaaattgaagaaact
ggtgctaaaagggagaatgaaaatccaaaggttgtgaaaaaaaaggtagataaaagtagt
ccgagtaatgtggagagagctcattcagagaagggaacaggaaaagtatccattcaaata
gattctcaagcttcagagccaagtaataaaatatccagagagattagttctttgcctaaa
aatgaagtgactgtggaggaagtccaacctgaaggtgacaatgaagtatttgaggacagg
gagcactctccgaatgtgagtatagaagaaagtcaagaaaacataaaggatatatcttgc
aagatgcccgtagttccctcaacatctgcaacttctcagtcttcatcagggaacaggcgg
agaaaaaacaaaaataaaaatataccaacattaccttcatcgccctctggaactccgttt
acttcagtaggttcttcggacggtgaaccaagcaacagtatgattattccatccccagaa
aacttagctgcacaagttgttgctatgcaagagacactaagtcagttggtgacaatgcag
aaagagctgccaaaacagatggcaagtgcaatttcaactcctgttacaaaagagggaaaa
agagttgaggcagccattagccaacgcatggaaaagtttctgaaagctcaaatggattct
ctgtggacaagaattcaagaggaaaatttgaaacgggagaggtctgaacgccaattgaca
gctctgttaactaacattttaaataaagaactgcctgctacaatagatcgcattttaaag
aaggaggtcagcagtctaggtacctctatagcacgactgattacaccaaacttggagaaa
gctatttcaacttcaattagtgacgcatttcagaaaggggtaaatgataaggcattatca
atgttggaaaagtcacttggtgcaaaacttgagtcagctgtattgcggcagatccaaact
cagttccaatcttccgggaagcaaatcatgcaggatgccttgcggatttgctttgagggt
tcagtaattccggcatttgaaaattcttgtaaagccatgtttgagcaagtagacactgca
tttcggaaaggaatgtctgagcatacaactgctgcacagcagcaattttctgtctcgcat
tctgcacttgcatctactctccaggacactgtagcatctgcatcatctcttgctcaatct
cttaaagcagagttagctgatgggcaacgcaaacttctagcgcttgcagaaagtgcagga
gcaagttcttctcgtgtgggcactttaattacggccaaaagcaatggcagtcttgggttg
cctgacaaggcaatttctcttgagcatctagaagaatcacttgacccaactaaggaactt
tcaagattggtttctgagtgcaagtttgaggaggcatttaacaaagcacttaaaatgaat
gacgtccctttagtttcttggctatgctctcaggttgatcctcagaccttgttcacaatg
gtccctttgcccttgagccaaggcgtgctcttggcacttgttcagcaacttggctatgac
cttgaaaaagattttgggcgcaaacttgtgtggataaaggaggcatgcactgtattgaac
ccaagtgatccgttactagctccacatatgcggccaattcttacacaagtttatccaaac
ttgcatcagaagatgctgaatagttcaggagcagaagcaagcactctgcgcctagtgctt
catgtttttaactctttgttgtcaacatgcaagtga
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integrated database retrieval system
