Cryptomeria japonica (Japanese cedar): 131038306
Help
Entry
131038306 CDS
T10556
Name
(RefSeq) vacuolar sorting protein 18
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
131038306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131038306
Membrane trafficking [BR:
cjf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131038306
Hops complex
131038306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Nup54_57_C
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-rbx1
zf_RING_Vps8
zf-RING_2
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
131038306
NCBI-ProteinID:
XP_057826649
LinkDB
All DBs
Position
6:393580810..393975295
Genome browser
AA seq
1025 aa
AA seq
DB search
MLDDWASLHSASESGSHTINEYAETYGISGGQKNTESHIFSVDTLERYASKGHGVITCMS
AGNNAILVGTNKGWLVRYDFGGGDNYELDLSISRTGDQIVHRVFVDPGGKHCLAVVLSNG
GAETFYTHAKWRKPRILSKLKGLVINAVAWNRQQISEASTRDIILGTMGGQLYEVVVEEK
DKKEKHLKLLFELIELKEPFVSLQMETIATGGTTRYYVMASTPTRLYTFTGTGSLDAVFA
VYANRSMHFTELPGETPSSELHFFVKQRQADFAWLAGAGIYYGNLNLGAPQSSSNGDDNF
VENKALVEYSKLEKDREGIKPHSLALSEFHFLLLFENKVKVVNRVSQKVIEELQFDREFD
SSSREILGLCSDVTAGVFYAYDENSIFEISVHDEGQDMWQVYLDMKEYAAALEHCRNTFQ
RDQVYSVQAEAAFSTKDFMRAAFFYAKTNYILSFEEVALKFVAAGEQDALRTFLLRKLDN
LGREDRSQITMISTWATELYLDKINRLLLDDDKQSGGTSPSSNEINTKYQETLREFRDFL
SDCKDVLDEATTVKLIGSYGRVDELVFFASLKEQHETVIHHYIQQGETRKALEVLQKPNV
SPELQYKFAPDLIMLDPYETVESWMVTSNLNPRRLIPALMRYSSEPHTKDEAHEAIKYLE
YCVSRLQNEDPAVHNLLLSLYTKQKDESALLRFLQCKYGKGRSGRPDIFYDPKYALRLCL
KEGRMRACVYIYSMLGMHEAAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIE
QERGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNKQIEKL
KQEMNDATHGADSIRQDISALAQRYAVVDRDEECGVCERKILTSRSGLGVARGFTSPMAP
FYVFPCEHAFHAQCLIGHVTKHTDPTEAERILDLQRRLSLAVNSGTTLNLERTSSIADEE
AQVSTRSPTDQIRAQLDDAVAGECPFCGELMIKEISLPFIMPEETEHVMSWDIKGGTFSR
EYGLT
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgttggatgattgggcttctttgcattctgcttcagaaagtggatctcataccatcaat
gagtatgctgagacttacggtatttctggaggacagaagaatacagagagccatattttt
tcagtagacacacttgaacgatatgcatccaagggtcatggagttataacatgcatgtca
gcgggaaataatgctatacttgttggaacaaataagggatggctcgttcgatatgatttt
ggaggtggagacaattatgagcttgatctctccattagccgtactggggatcaaattgta
catagagtctttgtggatcctggcgggaagcattgtttggctgttgtacttagtaatgga
ggagctgaaacattttacacacatgctaaatggagaaagcctcgtattctgagcaaactg
aagggtcttgttataaatgctgtagcttggaataggcagcagatttcagaagcttcaaca
cgagatataattcttgggacaatgggaggtcaactttatgaggttgttgttgaagaaaag
gacaagaaagagaaacatcttaagttgctatttgaattgattgagttgaaagaacccttt
gtgagtttgcagatggaaacaattgctacaggtggtacaactcgctattatgtaatggct
tctactccaaccaggctttatacgttcactggcacgggatctttggatgctgtgtttgct
gtatatgctaatcgtagtatgcattttacagaacttcctggtgaaacaccaagcagtgaa
cttcatttctttgtcaagcaacgacaggcagactttgcatggctagctggggcagggata
tactatggtaatctgaatcttggtgcaccacaaagctcaagcaatggagatgacaacttt
gtggaaaacaaggcccttgtagagtattcaaaattagaaaaagatcgagaaggaataaaa
ccacactcacttgcactatcagagttccatttcttgttgctttttgaaaacaaagttaag
gttgttaatagagtaagccaaaaagtgatagaagagctgcagtttgaccgagaatttgat
tcaagttctagagaaattcttggactttgcagcgatgttacagctggtgtattttatgct
tatgatgaaaactctatttttgagatatctgtacatgatgaaggccaagatatgtggcaa
gtttatttagacatgaaggaatatgctgctgctttagaacactgcaggaacacatttcag
agagatcaagtatactcagttcaggctgaggctgccttctctactaaggatttcatgagg
gcagctttcttttatgcaaagacaaattatatcttgtcatttgaggaagttgcattaaaa
tttgttgctgcaggcgaacaggatgcattgagaacctttttgctaaggaaattagacaat
cttggccgtgaggaccgttctcaaataacgatgatctctacatgggcaactgagttgtac
cttgacaagattaatcgtctacttttggatgatgacaaacaaagtggtggaacatcgcct
tcttcgaatgaaattaacaccaagtaccaggagacacttcgggagttcagagattttctt
agtgattgtaaagatgttcttgacgaagcaacaactgtcaaactaatagggagctatgga
agggtagacgaacttgtgttttttgctagtcttaaggagcaacatgagactgtaatccac
cattacattcagcaaggagagactagaaaagctttggaagtattgcaaaaaccaaatgtt
tctccagagttgcagtacaagtttgcaccagatctaatcatgctagacccatatgaaact
gttgagtcgtggatggttacaagcaatttgaacccaaggagattgattcctgcattgatg
cgttattccagtgaaccccatacaaaagatgaggcacatgaggctatcaagtatttggaa
tactgtgtctcgcggctccaaaatgaagatcctgctgtgcataacttgttactttccttg
tacacaaaacagaaagatgaaagtgcactcttacgcttccttcaatgcaagtatggaaaa
ggtcgatctggcagaccagatatattttatgatcctaagtatgctttacgtctttgtctg
aaagagggacgaatgcgtgcttgtgtttacatctatagcatgctgggcatgcatgaagca
gctgttgctctggcattgcaggtagacccagagctagcaatggcagaggcagacaaagtc
gaggatgacgaagacctgcgaaaaaagctttggctcatggttgccaagcatgtaattgag
caggaaagggggacaaaacgagagaacattcgaaaggcaatagcctttctcaaggaaaca
gatggccttctaaaaattgaagatatattacctttcttcccagattttgctctgattgac
gatttcaaggaagccatatgttcatccctggaagactataataagcaaattgagaaactg
aagcaggagatgaacgatgcaactcatggagcagacagcatcagacaagacatcagtgct
ttggcacaaagatatgcagttgttgaccgtgatgaagaatgtggggtttgtgaacgaaaa
atattgacttcaagaagtggacttggagtggctaggggttttacatcacccatggcgcca
ttttatgtttttccttgtgaacatgcttttcatgcacaatgtcttattgggcatgtcacg
aagcacacagatccaactgaggcagagcgcatacttgatctgcagcggaggctgagttta
gctgtgaactcagggacaaccctcaatttagaaagaacgtcaagcattgcagatgaagaa
gcacaagtcagcaccagatcacccacagatcagattcgagcacagcttgatgatgctgtg
gctggggaatgcccattttgtggagagttgatgataaaggagatctccttgccttttatt
atgcccgaggaaacagaacatgtaatgtcatgggacataaaaggtggtacattttcacga
gagtatggtttaacataa
DBGET
integrated database retrieval system
