Cryptomeria japonica (Japanese cedar): 131038318
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Entry
131038318 CDS
T10556
Name
(RefSeq) protein SPA1-RELATED 4
KO
K26557
protein SPA1-related 3/4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131038318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cjf04121
]
131038318
Ubiquitin system [BR:
cjf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
131038318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Pkinase
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
WDR90_beta-prop_4th
PK_Tyr_Ser-Thr
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
WDR54
Motif
Other DBs
NCBI-GeneID:
131038318
NCBI-ProteinID:
XP_057826678
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Position
6:complement(392220164..392309723)
Genome browser
AA seq
952 aa
AA seq
DB search
MDGSQGLNREQSGQREFYYSGESSINNDMSKDASNTGCSQAEQEEKCAGRPCGNLDNKQH
LCAFRTPTTTQPCMDDLEEDDISLREWLNMPNRSVNRLECLHIFKQILEIVSLAHSEGVV
LQNIRPSCFMLSSFNRVSFIESASCTSSGSDSSDDSTGRLPRTLPGQTANYNLRQHGNNM
GHISRAGREVDQTASVHMASHQTHARSISTRGDGCQELSLRDANTDVSRVSGRLTSTGDC
SKKLDVVGGMRVIPHAMDSDAGEGTNQENMDAMNEDENVEERSNRFPLKQILLMEMKWYT
TPEELSGGSISFSSDIYCLGVLFFELFCTFSSEAEQQAFMSNLRHRVLPPQLLCKWPKEA
SFCVWLLHPVAASRPKLSEVLQSEMISEAKEALEERQAAVKLKGKIADTELLLDFLLQLQ
KQKQERADKLSDVITCLTLDIEEVLRQQLILQHLAFDRNDKSPISKGKNSIDSSSQLDQI
SEPSFTNTGNIPTGKGTMLGKHLRQESKFHRASSRRKHGKSDVQIDREEELLSRSARLMK
HFKKLEQVYFSTRCKAKQFIGHSAGKHSSTSSIGWEPVVGTDTCNVSSVDSLAGIARQGA
GRMNDQLGSFFDSLCKYLRFSKFKVIANLQHGDLLNSSNLVCSLSFDRDKEFFATAGVNK
KIKVFEYNTVLHENMDIHYPVVEMTSKSKFSNICWNSYIKNQMASSDFDGVVRLWDVSKS
QSIMDFKEHGKRVWSVDFCQSDPTRLASGGDDGMVKLWNINQEKSIATIRTKANVCSVQF
APDSGRLIALGSADYKVYCYDLRNIRAPLCILASHNKTVSYVKFLDSGSLVSASTDNTIK
LWDLATNKARVLGSPVNPVRTFTGHSNVKNFVGLSVSDGYIASGSETNEVFVYHKSLPMP
VASYKFNSADPVTGLEMEDDDAQFVSCVCWRGQTQTLAAANSSGNIRLLEMV
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggacggctcccaaggattgaatagggagcaatcagggcagagagaattttattattcc
ggagaatccagtatcaacaatgatatgtcaaaagatgcttctaacactggctgtagtcag
gccgaacaagaagagaaatgtgcaggaaggccttgtggcaaccttgacaataagcaacat
ctatgtgcttttcggaccccaaccactacgcaaccctgtatggatgatttggaagaagat
gatattagcctaagagaatggttgaatatgcctaatagaagtgtgaatagattggaatgc
ctgcacatatttaagcaaattctggagattgtaagtcttgcacattcggaaggagttgtg
ttgcaaaatattcggccctcctgtttcatgctatcttcttttaatcgagtttcatttata
gaatctgcttcttgtacaagctcaggttctgattcttcagatgactcgactggaaggttg
cctcgaactcttccaggtcagaccgcaaactacaatttgaggcaacatggtaataatatg
gggcatatttcaagagcaggacgagaagttgatcaaactgcttcagttcacatggcaagc
catcaaacccatgcaagaagtatttcaacaaggggagatggatgtcaggagctatcactt
agagatgctaacacagatgtctccagagtgtctggaagattaacctctacaggtgattgc
agcaaaaaattggatgttgttggtggaatgcgtgttattccacatgcaatggattcggat
gcaggggaagggactaatcaagaaaacatggacgccatgaatgaagatgaaaatgtcgaa
gaaaggagcaatcgcttcccattgaagcaaatattgcttatggaaatgaaatggtacacc
actccagaggagctatctgggggatcaatatcgttctcttcggatatttattgtttgggt
gttctcttttttgagctattctgcacttttagctcagaagcagagcagcaggcatttatg
tcaaatcttcggcatcgtgtccttcctcctcagttgttatgcaagtggcccaaagaagct
tcattttgtgtgtggttgcttcaccctgtcgcagcttctcgtccaaaattaagtgaagtt
cttcagagtgaaatgatcagtgaagccaaagaggctttggaagaacgacaagctgcagtg
aagttgaagggaaaaattgctgacacagaattattgctagatttcctgcttcaattgcag
aagcaaaagcaagagagggctgataaattatctgatgttattacttgcctgacactagac
atagaagaagttctgagacaacagttaattcttcagcatcttgcattcgacagaaatgat
aaatccccaatttctaaaggaaagaattccatagattcatctagccaacttgatcagatc
agtgaaccaagtttcacgaacactggcaatataccaactggaaaaggaaccatgctagga
aaacaccttcgacaagagagtaagtttcatagggcaagtagtagaaggaagcatggaaaa
tctgatgtccagattgatagagaggaagaactcctatccagaagtgcccggttgatgaaa
catttcaaaaaactagaacaagtttatttttccacgagatgcaaagcaaagcaatttatt
ggtcattcggcaggaaaacattcaagcacgagcagtatcggatgggaacctgttgtggga
acggatacttgtaatgtgagctcagttgacagtttagcaggtatagcgcgtcaaggtgca
gggagaatgaatgatcagcttggctctttctttgatagcttatgcaaatatttgagattc
agcaaattcaaggtgattgcgaacctacagcacggggacttgcttaactcttctaattta
gtgtgttccttgagttttgatcgagacaaagaattctttgccaccgcaggagtcaataag
aaaattaaagtctttgagtacaatacagtcttacatgagaatatggatattcattatcct
gtcgttgagatgacaagtaaatccaaatttagcaatatctgttggaatagttatatcaaa
aaccagatggcctctagtgactttgatggtgttgtgcggctgtgggatgtaagtaaaagc
caatctattatggacttcaaagagcatgggaaacgtgtttggtcagttgacttttgccaa
tctgatccaacaagattagccagtggaggtgatgatggcatggtgaagctttggaacatt
aatcaggaaaaaagtattgctacaatccggacaaaggcaaatgtctgctctgttcagttt
gcaccagattctggtcgtctaattgcattgggttcagcagactataaggtctattgctat
gatcttcggaatataagagcacctttgtgcatcttggcaagtcacaataagactgtgagc
tatgtcaagtttcttgattcgggttcacttgtttctgcttccacggataacacaatcaag
ctctgggatttagcaacaaacaaggcaagagtacttggcagtcctgtgaatcctgtccgg
acatttaccgggcattcaaatgtaaagaattttgttgggctttctgtttctgatgggtat
attgcctctggttcagaaacaaatgaggtttttgtataccacaaatcacttccaatgcct
gtggcatcttataagttcaactctgcagacccggtgacaggactggagatggaagatgat
gatgcacagtttgtttcatgtgtttgctggagagggcaaacacaaacattagcagctgcc
aattcttcaggaaatataaggcttctggagatggtttaa
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