Cryptomeria japonica (Japanese cedar): 131038426
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Entry
131038426 CDS
T10556
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013
Nucleocytoplasmic transport
Brite
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131038426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131038426
NCBI-ProteinID:
XP_057826843
LinkDB
All DBs
Position
8:complement(81087154..81221407)
Genome browser
AA seq
2296 aa
AA seq
DB search
MPLFISDTELRDSGGDVSFVVEKADAFIRELQDEVETCRARADAASITAEQSCALLEQKY
ISLSGQFTQLENEKVRLTSALDRRATELAQAQAQAHKLELAVIKKDSEAERLSLEVSELH
KSKRELLEVLEQKSTELNEKNNSIKIYLDKILALTNDRGTLEAKIREIEAEFARSHAAQA
RLLQEKELIQRHNTWLNEELTSKVNVVLQQRQSSAELEAELSAKLSEAEKKGSESFGELQ
RSKEKVKELEEKLASAREELRFTKEDAASKEEHFSAEVATSSRLSDLYKESSDEWRQKAN
ELEGVIKALETHLNQVETEYKEKLQREVSTREDLVKEAAELREKLEKARADIESCSTEKE
SNTLALVNFSVDRNIEQLLSNDPDSALDLHGDGMVVPRIAPGISGTALAASLLRDGWSLA
KIYTKYQEAFDAWRHERQGHKQSQAILERVLREIEEKAEFILDERAEHTRMIEAYAIMEE
KLQQSMSDQASLENTIRDLKADLRKRERDYGTALKEVQDLQTQVTLLLKECRDIQLRCGV
GEGISTEDTITDITALASDGTSVDKLTFKDIHGMVEQNCQLRSLVRTLSQRVEQREQELK
EAFDTELKMRTDEAVSKVSLILKKSEEQSGMIESLQGTLGMYRRLYEEEVKNRSFFQYPT
GGSSGDGKKDLRRLVEVSQETVQKTLDQATERIRCLEEDIKTAKHEAYTLRSERDRLLLE
TNYARERLDSFMKDSENQRNEMNAVLARNVEFSQLITEYQRRLRESSQNAQASEELVRKL
SVEVSVLEHEKNILSNAEKRVSEEVVELSKRVYKLQATLDTIHDVEEVRESSRVEERKRL
EDKLNSLQREWAEAKEELQLEREHVRNLANEKEQTLKQAMSQIESMSKDLANALQAVSSA
ETRALVAEARCSDLEANLKKVEYKASGKEMDISSLVDEEEAAMALEKAREEIERLKEDLQ
ASHQHAEQFKRIAQANEDALQQIERAHEHFKAEANKLKQSFDAEISMLKRRITDLEAEVT
DKEIALKSAVEEKESVLINSSKEKADLADELYLKTRQLEEAQICIATLKEDLEKEHQNWR
TAQNNYERQVLLQAETIQELSKASQSLETLQQEVLELRKISSTVKSEYESSKVSWEMEKE
SLQSLKAAAEQKYKESDEQNKRLLDRLEATHIMVAEKERIDIGSGLQGQVSNNQGESDLQ
NVIRYLRRSKETADTEISLLKQERMRLQKQLENALQASGTMQAALRRERENHHTNIYTDE
EFRSLQCQVTEMNLLRESNTQLREENKRNFEECQELRERAHQTRSTIDQLQKSLQEKEIE
LDATQKELELQKTEIGLWENRVSKLLEKYKTIDPEDYDRVKTELQQLQGKLEVTISELEL
SKKLIAEKQERISYLEDEVLSKDNKLTEVEKKLQETSQAEATIKLEAEKLRKQYVQQKRK
IEDLTKERQGLSKQIDESRLNTGKKAMGELSKQQESIIRQEMAAQHEQSLKESENKLKEK
DVRIQILEKTLEREREELRKERDENKSLKSRCLKDRKAFVNHAQNVVQEKKKFQDEFESY
KRQRGNNLEVSASSLGQLSAEAQLDDRAVSYLSAVDQLEEASNAVATDVPTVRSSAIDFP
SLVVPSVGTGDVLPTISTSGSVSTIVTVAPGKSNLSAPSSTTATSTLPTTTGPIISSTAV
TIRQIPRQALASTPFYQHSAQGSGGSTSIPSQVKGSDDKEQKLHQGKPMLDDKEKSRKTG
RRIIRPRIERTNQQDSAVEADGSEMEAETVEEGKSGIPVEIESQGALPAPSASVVGSEST
SLPFVLGTLSAGPSVRKRAHVASTSHADEEVSAEPDTKLDLAQFQKKARRMDMQEELTDQ
GDPSFEKTEKIPPMEITQEMDEMENVANEAELKDNLKEELSEMTGNGSKRNLEPEEPTSK
DLKRPRIHRFDDSKFGKQQEAQDKLDTEEYGEVEKSQSSEKPKEIDEPLEEDGCQLDKAD
SSEKKHEKVDTPVQQDVTEEVEMLLVEKQQSPTIVQSSIEILSGGDDNGKQQEEGLLIVE
LVDGADASASASKEPESQGVHSGLDVENEKIVTDNFSVEATEGSQISDPPDVEEGEIPVD
LDDVEIASSNLDSFTGDIELVAHDEDKREMQGEGFTQPEFVLPSEEITENLNQTSTDFDQ
NSQQASVVNISDAAMPEQSSQQARGVNITDAQSDHSSQQILAATASDVIVEDKNKVDVVS
TSSEMVQENTRANTRIINLTDRAKEGKQIRERERGRNIGVSPSQISRGRGRNVRGTKRGA
GLARGRGFTRDDSQGQ
NT seq
6891 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgtttatttctgataccgagttacgcgactcgggaggggatgtctctttcgtt
gtggagaaggcggatgcttttattcgggagctgcaggatgaggtggagacatgcagggcg
agggcggatgctgcgtctataacggccgagcaaagttgcgctcttttggaacaaaagtat
atttcgctttccgggcagtttacgcagttagagaacgagaaggtgcgacttacctctgct
ttggataggagggcgacggaactcgcacaggcgcaggcgcaagcgcacaagctcgagctt
gcagtcattaaaaaggatagcgaagctgagcgcttatctcttgaagtcagtgagctgcac
aaatcaaagagggagttattggaagttctggagcaaaaaagtacagagcttaatgagaag
aataactcaattaaaatatatttggacaaaattcttgccctcaccaatgatcgtggtact
ttggaagccaaaatacgagaaattgaagctgaatttgcccgttcacatgcagcacaggct
cgtcttctgcaggagaaggagttaattcaaagacacaacacctggttgaatgaagagtta
acatctaaagttaacgtagtcctacagcaacgccaaagtagtgcggaattggaagccgag
ctttctgctaaactatcagaggctgagaaaaaagggagtgaatccttcggcgagttacag
aggagtaaagaaaaagttaaggagctggaggaaaaacttgcgtctgcaagagaggagcta
agattcactaaagaagatgctgcttccaaagaagaacatttttcagcagaagttgcaact
tcttctaggctttcagatttgtacaaggaaagttctgacgagtggagacaaaaggcaaat
gaacttgagggtgtgatcaaagcattagaaacccatttgaatcaggtcgaaactgaatat
aaagagaaacttcagagagaagtttctacacgagaggatttagtgaaggaggctgcagaa
ttgagggagaagttggagaaagctcgagctgacatagaaagttgcagcactgaaaaggaa
tctaatacacttgcattggtcaatttctcagtggacagaaatatagaacaattactgagc
aatgatccagactctgctttggatttacatggtgacgggatggttgtaccaagaattgca
ccaggaatatcgggaacagctttagcagcttccttacttagagatggttggagtctagct
aaaatatatacaaagtatcaagaggcttttgatgcatggcggcatgagaggcaagggcat
aaacagtcacaagctattttagagcgggttttacgtgagatagaagagaaggctgaattt
attttggatgaaagagctgaacacacaaggatgattgaggcatatgctataatggaagag
aagctacagcagtcaatgtctgatcaagcaagcttagagaacactatacgggatttgaag
gctgacttgcgtaagagagagcgtgattatggtactgccctaaaggaggtccaagatctt
caaacacaggttacattgcttttaaaagagtgcagagacattcagctaagatgtggagtt
ggtgaaggaatttctactgaggacactattacagacattacagctctggcatctgatgga
acatctgtggacaagttgacattcaaggatattcatggaatggtggaacaaaattgtcaa
cttcgtagcctggtccgaactctttcccagcgggttgaacagagggaacaagagctaaag
gaggcatttgataccgagcttaagatgcgaactgatgaggctgtctccaaagtttcactt
attttaaaaaagtctgaagagcagtcaggcatgatagagtcccttcagggaacattggga
atgtatagaaggctctatgaggaggaagtcaaaaatcgttctttcttccagtaccctact
gggggttcgtctggtgatgggaagaaagacctcagaaggcttgtagaagtttctcaggaa
acagtccagaagacactagaccaggccactgaacgcattagatgtcttgaagaagatata
aagactgcaaaacatgaagcatatacgcttcgctctgagcgtgacagactccttttggaa
acaaattatgctcgtgaaaggctagactcatttatgaaggattctgaaaaccaacgaaat
gagatgaatgctgttctagcaaggaatgttgaattctcccaacttataacagagtatcag
cgaaggttacgagaaagttctcagaatgctcaggcatctgaagaacttgttcgaaagctt
tctgtagaggtttctgtcttggaacacgaaaagaatattctttccaatgcagagaagagg
gtatctgaggaagtagttgaattgtcaaaaagagtttataagttacaggcaactctagat
acgatccacgatgttgaggaggttcgtgagagttcgagagtagaggaaagaaagagacta
gaagataagttaaattctttgcagagagagtgggcagaagcaaaagaagagcttcagtta
gagagagaacatgttcggaatcttgcaaatgaaaaagagcaaactttaaaacaggcaatg
tcacagattgaatcaatgagcaaggatttggccaatgccttacaggcagtgtcttcagca
gaaacaagggcattggttgcagaggccagatgttctgatctggaggcaaatctaaagaag
gttgaatacaaggcatctggcaaagagatggatattagttcattagttgatgaagaggag
gctgctatggcattggaaaaagcaagagaagaaattgaacgcctgaaagaagaccttcaa
gcttcgcatcagcatgcagagcagtttaagcgcatagctcaggctaatgaggatgcactc
cagcaaatagaaagggctcatgaacactttaaggctgaggcgaacaaactaaaacagtca
tttgatgctgaaatctctatgcttaaaaggaggataacagacctagaagctgaagtcaca
gataaagaaattgcattgaaatcagcagttgaggaaaaagaaagtgtgcttatcaattct
tcaaaagaaaaagcagatcttgcagatgaactttacttaaagacacggcaacttgaagaa
gctcagatttgtattgctactttaaaagaagacttggaaaaggaacaccagaactggcgt
actgctcagaataactatgagagacaggtgcttctccaagcagaaactatacaagagttg
agcaaagcctctcaatcactggaaaccctacaacaggaagtattagagttgcggaaaatt
tcaagtacagtaaaaagtgaatatgaatcttcaaaggtttcatgggagatggaaaaggaa
tctttgcagtctctaaaagctgctgccgagcaaaagtataaggagagtgatgagcagaac
aagcgtttacttgatcgcttggaagccacgcatataatggtagcagagaaggaaagaatt
gacattggctccggtctacaaggtcaggtttctaataatcaaggtgaaagtgatctgcaa
aatgtaatacgctatttgcgacgatcaaaggagactgcagacacagagatttcattatta
aaacaagagcggatgcgacttcagaagcagcttgaaaatgctctccaagcatctggaacg
atgcaagctgcattgcgtagagaacgtgaaaatcatcacactaatatctatacagacgag
gagtttagatctctgcaatgccaggtgacagaaatgaacttgttaagagaaagtaacaca
cagctaagggaagaaaataagaggaattttgaggaatgccaggaattgcgagaaagagct
catcaaacacggtccactattgaccaactacagaagtctttgcaagagaaagaaattgag
ctggatgcaacacaaaaagagttggaattacagaaaacggagattggactttgggaaaat
agagtttctaagttgttggaaaagtataagacaattgatcctgaggactatgaccgtgtg
aaaactgagctccaacaacttcaggggaagttggaagtgacaatatcagaactcgagttg
agtaaaaaattgatagcagaaaagcaagagagaatatcttatttggaggatgaggtcctt
tctaaagataataagttgactgaagtggagaagaagctacaggaaacatcccaagctgag
gcaacaattaaattagaagctgagaaattgagaaagcaatatgttcaacaaaagcgaaaa
attgaagatctaacaaaggagagacaaggcctgtcaaagcagattgatgagtccagattg
aatactgggaaaaaagccatgggggagctttccaagcagcaagaatctattattcgtcag
gaaatggcagctcagcatgagcagtctctaaaggagtctgaaaacaagttaaaggaaaag
gatgtgaggatacagatattagagaaaacattggaaagagaaagggaagaattgcgtaag
gaaagagatgagaataaaagtttaaaatctaggtgtctcaaagatcggaaagcatttgtt
aatcacgctcagaatgtagttcaggaaaagaagaagttccaagatgagtttgaaagctat
aaacgtcaacggggtaataatctagaggtaagtgcttcatcacttggtcagctttctgct
gaggctcaattagatgacagagccgtgagctatctttctgcagtagaccagcttgaagag
gcctcaaatgctgtagccactgatgtgccaaccgttcgttcaagtgctattgattttcca
tccttggttgtaccatctgtaggaacaggagatgttctacctacaatatctacttcaggc
agtgtgtcaactattgtaactgtagctcctggcaaatcaaacctatctgctccaagtagt
accactgcaactagtacattaccaaccactactggaccaattatttcaagtactgcagtt
accattcgacagattcctcgacaggctcttgcatctactcctttttatcaacattctgca
caaggatcaggtggaagcacaagtattccatctcaggtaaaaggtagtgatgacaaagag
cagaagctgcatcaggggaaacctatgctagatgataaagagaaatcacgaaaaacaggt
aggaggataattcgacctcgaatagaacgaacaaatcaacaagattctgccgtggaagct
gatggatctgaaatggaagcagagactgttgaggaagggaaaagtggaatacctgtggaa
atagaatcccaaggagctcttcctgctccatctgcttcagttgtaggatcagaaagtaca
agtttgccctttgtgcttggcacattatcagcaggtcctagtgttcgaaagcgtgctcat
gttgcctctacatcacatgcagatgaagaagtatctgctgaaccagacacaaaattggat
ttagcacaatttcaaaagaaggcacgacgtatggacatgcaagaagaacttactgatcaa
ggtgatccttcatttgaaaagacagaaaagattcctccaatggagattacacaggagatg
gatgaaatggagaatgttgcaaatgaagcagagttaaaagataatctcaaggaagagctg
tctgagatgactggtaatggtagtaaaaggaatttagaaccagaggaacctacgtcaaaa
gacttaaaacggccccgaatacataggtttgatgactcaaagtttgggaagcaacaagaa
gctcaggataaacttgacactgaggaatatggtgaagtagagaaatcacagtcttcagaa
aaaccaaaggaaatagatgaaccacttgaggaagatggatgtcagttagataaggctgat
tctagtgaaaaaaaacatgaaaaagttgacactccagtacagcaagatgtaactgaagag
gttgagatgcttttggtggaaaagcagcaatctccgaccatagttcaatcatcgattgag
atcctgtctgggggcgatgataatgggaagcagcaagaagaaggtttgctaattgtggag
ctggttgatggagctgatgctagtgcctctgcttctaaagaaccagagtctcaaggggtg
cattctggtctcgatgttgagaatgaaaaaattgtgacagataacttttctgtcgaagcc
actgaaggtagtcaaatctctgatccaccggatgttgaagagggagagattcctgttgac
ttagatgatgttgagattgcatcaagtaatctggatagtttcacaggagatattgagctt
gtagctcatgatgaggataagcgtgaaatgcaaggtgaaggttttacacagccggaattt
gttttgccctctgaagaaattacagaaaatttaaatcagacatccacagactttgatcaa
aattctcagcaggcctctgtagttaatatttctgatgcagcaatgccagaacaaagttct
cagcaggctcggggagttaatatcactgatgcacaatcagatcacagttcacaacagata
ttggcagctactgcttcagatgtaattgttgaagataaaaacaaggttgatgtagtaagc
acatctagtgaaatggtacaagaaaacacacgtgctaatacaaggattataaacttaact
gatagggcaaaagaggggaaacagataagagaacgagaaaggggaaggaatattggagtg
tctccatctcaaatatctagaggtcgaggaagaaatgtgaggggtaccaagagaggagct
ggtttggctcgtggacgtggctttacaagagatgattcacaaggccagtaa
DBGET
integrated database retrieval system
