Cryptomeria japonica (Japanese cedar): 131038656
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Entry
131038656 CDS
T10556
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013
Nucleocytoplasmic transport
cjf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131038656
03015 mRNA surveillance pathway
131038656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131038656
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131038656
5.6.2.5 RNA 5'-3' helicase
131038656
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131038656
mRNA cycle factors
Common to processing body (P body) and stress granule
131038656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
AAA_16
SRP54
PhoH
AAA_22
ATP-gua_PtransN
nSTAND_NTPase5
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
131038656
NCBI-ProteinID:
XP_057827135
LinkDB
All DBs
Position
9:736976219..737014605
Genome browser
AA seq
1255 aa
AA seq
DB search
MADQPVSNIYEPASQGHGDAYTFLEFNTQGDDFDYPEFTELSQPIRPPVWADGSQPTDGN
DLMGVVNSGINLGTDVSNDGKPRNNLNQVGIGADALVDNMRSLNFEDAGCEDDGNDYSKR
DTPEHACKYCGIHNPACIVRCNVPSCRKWFCNSRGNTSGSHIVSHLVRAKHKEVCLHKDS
PLGDTILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWLPLID
DRCFLQWLVKVPSEQEQLRARHVTAQQINKLEELWKTSPEATLEDLEKPGVDDEPQSVAL
KYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNITVRWDIGLNKKRIAYFVFPKEDNEL
RLVPGDELRLRYSGDANHPAWQSVGHVIKLTAQEEVALELRASQVFGSSLQGVPIDVIHN
YSVDFVWKSTSFDRMQTAMKTFAVDETSVSGYIYHRLLGHEVEDPMVRNTLPRRFGAPGL
PELNASQVSAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHLAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGE
LSSADEKKYKALKRATEREIAQSADVICSTCVGAGDPRLSNFRFRQVLIDESTQATEPEC
LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLEVQYRMHP
SLSEFPSNNFYEGTLQNGVTVIERQLTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTESANVEKIVTTFLRSGVIPGQIGVITPYEGQRAYIVNHMARHGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVVLGNPKVLSKQPLWN
GLLSHYKEYECLVEGPLNNLKQSMVQFQKPKKIYNDRRIFPGGGPTNVPDSFTGGVVNDK
RNPRARGNSFMPFGQLPNGSHKSGVHPSGFPFPRVPVPPYPGAPLGQPYAIPSRGGVHGA
IGVPQGPQTGNRGFGAGRGSAGGPIGGHLPHQGSRQPIGSIGSGFNFAGLENPASQTLVG
GPLSQTGLLTQLPNQGLSQSLRDGFSLGDMSQDFLGDDFKSQGSHVAYNVADFNTQASQG
GYGVEYVTQNTQGAFPGDFMNQNSQSGYSVSNTGNDFISQDYMPHGSQGLFTQVGFNDRS
QDESSQSHFGLAGPLQSQGPLNLYSQPFTQYAHPLNQQAQQQQAQQQVPPNQRHR
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccagccggtttcgaatatctacgagcctgcttcccagggtcatggcgacgcg
tacacttttctggagttcaatacgcagggagacgatttcgattacccagaatttacagaa
ctcagccagcccatcaggccacccgtttgggccgacgggtcgcaacccaccgatggaaat
gatctaatgggtgttgtcaattctggaattaatctcggcacagatgtttcgaacgatggt
aaaccgaggaacaaccttaaccaggtgggtataggggccgatgcgcttgtggataatatg
agaagccttaatttcgaggatgcagggtgcgaggacgatggcaatgattattctaagagg
gatactcccgaacacgcctgtaaatattgcgggattcataaccccgcatgtattgttcgc
tgtaatgtaccgtcatgcaggaagtggttctgcaactccagggggaatacttcaggttct
cacattgtcagtcacctggttcgagcaaaacacaaggaagtttgccttcataaagacagt
cccttaggggacactattctggagtgctataattgtggctgccgaaatgtgttcttattg
ggatttatctctgctaagacagagagcgttgtagttctattatgcagggaaccttgcttg
agtgtcaatgctctaaaggacatgaattgggatcttagccagtggttaccattgattgat
gatagatgcttcctccagtggcttgtgaaggtcccttcagagcaggaacaactgagagca
cgccatgttaccgcacaacaaattaacaaactagaagagctttggaaaacaagccctgaa
gctactctcgaagatcttgagaaacctggagtagatgatgagcctcagtcagttgcttta
aagtatgaagatgcatatcagtaccaaaatgtttttgcacccttggtgaaacttgaggca
gactatgacaagatgatgaaagaatctcagagtaaagacaatataactgttcgctgggat
attggtctcaataagaagcgtatagcatattttgtatttccaaaggaggataatgaacta
cgtctggtacccggcgatgagttgcgcctgcgttattccggggatgcaaatcaccctgcc
tggcagtctgttgggcatgtgattaagctgactgcacaagaggaggttgcacttgagctg
cgggccagtcaggtctttggttcatctttacagggtgttcctattgatgtcatccataat
tatagtgtagattttgtgtggaaaagtacaagctttgatcgaatgcaaacagcaatgaaa
acatttgctgtagatgagactagtgttagcggttatatatatcaccgcttgctaggacat
gaagttgaggatcctatggttcgtaatactttaccacgtcgctttggggcgcctggcttg
cctgaactaaatgcatctcaggtcagtgctgtcaagagtgttttacaaaaacctgtgagt
ttgattcaaggtcctcctggaacgggaaaaactgttacatctgctgctattgtatatcat
ttagcaaagcagggtcaaggccaggtcttggtttgtgctcctagtaatgtggctgttgat
caacttgctgaaaaaattagtgctacaggtttaaaggttgtcaggctatgtgccaaatca
agggaggcagtgagttctccagttgaacacctaacacttcattaccaggttaggcaccta
gatacttcagacaagagtgaattgcataaacttcagcaattgaaagatgaacaaggggaa
ctatcaagtgctgatgaaaagaagtataaggcattgaagagagcaacagagagagagata
gctcagagtgctgatgtcatttgctctacctgtgttggtgctggtgaccctcgactatca
aacttcaggtttcgtcaggtcctcattgatgagtccacacaagccactgaacctgagtgc
ctaattccattagttcttggagcaaagcaggttgtactagttggggatcactgtcaactt
ggtcctgtgataatgtgcaagaaggcagctcgtgctggtcttgcacagtctttgtttgag
cgacttgtactcttgggtgttaagcctttcagattagaggttcaatatcgtatgcatcca
tctttgtctgaattcccttcaaacaacttctatgaaggcacacttcagaatggtgtaact
gtaatcgagagacaattaactggaattgattttccatggcctgtgccgaatagacccatg
ttcttttatgtgcagatggggcaagaagagataagtgcaagtggcacatcttatcttaat
agaaccgaatctgcaaatgtggagaagatcgtaacaacttttttgagaagtggtgtaatt
cctggccagattggggtgatcacaccatatgaaggacagcgggcatacattgttaatcac
atggccaggcatggcgcattgcgtcaacagctttataaggaaattgaggttgcaagtgta
gattcatttcagggccgtgaaaaagattatataatattgtcttgcgtaaggagcaatgag
catcagggtattggatttttgaatgaccccagaaggctgaatgttgcacttacacgagct
cgctatggtattgttgttttgggaaatcccaaggttttaagtaagcaacccctttggaat
ggtttactctctcattataaggaatatgagtgcttagtagaagggccactgaacaatcta
aagcagagcatggtacagtttcagaaaccaaagaagatttacaatgaccgaagaattttc
cctgggggtgggccaactaatgttcctgatagcttcactggtggggtagtgaatgataaa
aggaatcctcgcgcaagaggcaattcattcatgccatttgggcagttacccaatggcagt
cacaaatctggggtgcacccatcaggctttccttttccacgggttcctgttccaccatac
cctggagcaccacttggtcaaccttacgcaattccttcacgaggtggtgtccatggagca
ataggtgttcctcaagggccacagacaggtaacagaggatttggtgcagggcgtggaagt
gcaggtggtcccattggggggcatttaccacatcaaggatcgcgtcaaccaattggaagt
ataggatctggtttcaactttgctggtcttgaaaatccagcaagccagactttagttgga
ggtccgctgtctcaaactggattattgactcagttgccaaatcaaggattgagtcaaagc
ttacgagatggcttttctcttggggatatgtctcaggattttcttggggatgatttcaag
agtcaaggatctcatgtggcttacaacgtagcggacttcaatactcaggcatcccaaggt
ggatatggtgttgagtatgtcactcaaaacacgcaaggtgccttccctggagactttatg
aatcagaattctcagagtgggtactcagtatcgaatactggaaatgacttcatttctcag
gactatatgccacatgggtctcagggcctctttactcaggtaggttttaatgatcgctca
caggatgagtcatcacagtctcactttggcttagctggaccacttcagtcacaggggcca
cttaatctgtactcacaaccatttactcagtatgcccacccactgaaccagcaagcccag
cagcagcaggcacagcaacaagttcctccgaatcagaggcatcggtag
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integrated database retrieval system
