Cryptomeria japonica (Japanese cedar): 131038911
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Entry
131038911 CDS
T10556
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131038911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131038911
03110 Chaperones and folding catalysts [BR:
cjf03110
]
131038911
03029 Mitochondrial biogenesis [BR:
cjf03029
]
131038911
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjf04147
]
131038911
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
131038911
Messenger RNA biogenesis [BR:
cjf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
131038911
Chaperones and folding catalysts [BR:
cjf03110
]
Heat shock proteins
HSP60 / Chaperonin
131038911
Mitochondrial biogenesis [BR:
cjf03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
131038911
Exosome [BR:
cjf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
131038911
Exosomal proteins of other body fluids (saliva and urine)
131038911
Exosomal proteins of breast cancer cells
131038911
Exosomal proteins of colorectal cancer cells
131038911
Exosomal proteins of bladder cancer cells
131038911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
131038911
NCBI-ProteinID:
XP_057827472
LinkDB
All DBs
Position
1:complement(25317024..25321599)
Genome browser
AA seq
601 aa
AA seq
DB search
MATNALVMKAAMAPHPFHSIAKPDALGRRMPAISGRLIGGSGSIAVKSSTQRRKQRLLVR
AAAKDIMFDQDSRAAMQAGIDKLADAVGVTLGPRGRNVVLDEFGMPKVVNDGVTIARAIE
LPNPMENAGAALIREVASKTNDSAGDGTTTASILARAIIKLGLLNVTSGANPVAVKKGID
KTVLGLVEELEKKARPVKGRDDIKAIATISAGNDDFVGTMIADAIDKVGPDGVLSIESSS
SFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISTIKDIVPVLEKTT
QLRAPLLIVAEDLTGEALATLVVNKLRGVINVAAIKAPSFGERRKAVLQDIAILTGSEFI
AADLGMKVEDATEEQLGIARKITITKDTTTIIADAASKDEIQARIAQLKKELAETDSVYD
TEKLSERIAKLSGGVAVIKVGAATETELEDKKLRIEDAKNATFAAIEEGIVPGGGAAYVH
LSTFVTAIKQSMEDPEERLGADIIQKALLAPAALIADNAGVEGDVVVEKLLSSEWEIGYN
AMTDKYENLLDVGVIDPAKVTRCALQNASSVAGMVLTTQAIVVEKPKPKSAAPAMPGGMT
I
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaatgcgttggtgatgaaggcggccatggcaccacacccatttcactccata
gccaaaccagatgcgcttggaagaagaatgccggccatcagtgggagattgataggcggc
tctggcagtattgcagtgaaaagctcaacgcagaggagaaagcagaggttgttggtcaga
gctgcggcgaaggacatcatgttcgaccaggattctcgtgcagctatgcaggctggtatt
gataaactagccgatgccgtgggtgttacattggggcctcgagggcggaatgttgtgttg
gacgaatttgggatgccgaaggtggtaaatgacggagtcaccattgctcgcgccattgag
cttcctaaccccatggagaatgcaggggctgctttaatccgagaggttgctagtaagaca
aatgactcagctggtgatgggacaacaactgcttctattttggcacgggcgatcataaag
ctaggacttctaaatgttacgtctggagcaaacccagtagctgtcaagaaaggaattgac
aagacggtactgggtcttgtggaggagctggagaagaaggccaggcctgttaaaggtcga
gatgacatcaaagctatagcaacaatctctgctgggaacgatgattttgttggaaccatg
atcgctgatgcaattgataaggttggcccagatggggttttatctattgagtcttcatcc
tcatttgagaccacggttgaagttgaggaagggatggagattgacaggggttatatatct
ccccaatttgtgacaaatccagaaaaattgattgtagaatttgaaaatgctcgagtcttg
gtcactgatcaaaaaattagcaccatcaaggatattgtgcctgtactggaaaaaaccact
cagttgagagcacctttacttatagtagcagaagatcttacaggggaggcattggctaca
ttggttgtcaataaattaagaggagtaattaacgttgctgctattaaagctcctagcttt
ggagagagacggaaggctgttctccaagatattgctattctcaccggttcggagttcata
gctgctgatttgggcatgaaggtcgaggatgccacagaggagcagcttggaattgcaaga
aaaataactataactaaagacacaacaaccattatagctgatgctgcatccaaagacgaa
attcaagcaagaattgctcaacttaagaaagaattggcagagacagattctgtctatgac
acagaaaaattatcagaaagaattgcaaagttgtctggaggagttgctgttatcaaggtt
ggagctgcaacagagaccgaactcgaagataaaaaactcaggatcgaggatgccaaaaat
gccacctttgcagccattgaggaagggattgttccgggaggaggagcagcttatgttcat
ttatcgacatttgtaacagcaataaaacaatccatggaagatccagaggagagacttggt
gctgatattatacaaaaggcacttttggccccagctgcattaattgcagataatgcgggt
gttgaaggtgatgttgtggttgagaaacttctatcaagtgaatgggagatcggatataat
gcaatgacggacaaatatgaaaaccttcttgatgttggtgtgatagaccctgctaaagta
acgaggtgtgcactgcaaaatgcttcttctgttgccggtatggttctgacaacccaggca
attgttgtagaaaagcctaaaccgaaatctgcagctcctgcaatgccaggaggtatgacc
atttag
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