Cryptomeria japonica (Japanese cedar): 131039313
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Entry
131039313 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131039313
03420 Nucleotide excision repair
131039313
03430 Mismatch repair
131039313
03440 Homologous recombination
131039313
03460 Fanconi anemia pathway
131039313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131039313
03032 DNA replication proteins [BR:
cjf03032
]
131039313
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131039313
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131039313
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131039313
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131039313
MMR (mismatch excision repair)
131039313
DSBR (double strand breaks repair)
HR (homologous recombination)
131039313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep_fac-A_C
tRNA_anti-codon
Rep-A_N
OB_MEIOB_N
DUF223
TPP1
SH3_Rv0428c
SOGP_4th
Motif
Other DBs
NCBI-GeneID:
131039313
NCBI-ProteinID:
XP_057828007
LinkDB
All DBs
Position
6:411571393..411573758
Genome browser
AA seq
535 aa
AA seq
DB search
MSSTIASPDGSEQPSAETLEVQPQLQLTPHAILCINAGDDVPSLVLQLLSFEKLTAEEDD
SARYRVVLSDATHMQLAILPPKTIVIFSLAVKFTNSPLLGKPRYLFKEKEQQMLGRDTPA
TTKCSLKFGIHLPPVQRESSINISPIKALNPYQNNWTIKGRVTNKRKMHQYSTPKSTGQV
FNFDMIDDEGTEIRITCFGDEVEMHYHRVEAGTYYTVSKGCIKEANTKWNKLNSHLEITL
DNNSVLKRCDAVVDIQRNNSRFTPINEITYCTNNILVDVIGIVVAVGEPSLIRRKDGSEV
TKRIVKINDISTFTIDVNLWGATWQGVGEDLKNMHATQTAVVLAVRNARVGYFNGKVINT
TTATTLAINPSIPEIETLISRGKILDDLLIVSCVVGQLNSQYNRMTITAVLECTSVLSET
IETTIRATMKLLDHTGTLWATAFDEVGTNLLQISAKDLYMLQYDLTTKRTPQTIIKGVLL
SSFVFTLSITTDMYNSEPRLKATITKVTNINFQAECTLLLAEIARMSTAIVFPTN
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccacgatagcctctcctgatggctcagaacagccttctgcagaaactttggaa
gtgcaaccacaactacaattgaccccgcatgcaatcttgtgcatcaacgctggggatgat
gtcccctctctagtgcttcagcttttgtcttttgaaaaattaacagccgaagaagatgac
agtgcccgatatagggttgttttgtctgatgccacgcacatgcaattggcgatcctcccg
cctaagactatagtaatattcagccttgctgtcaaatttacaaattctccattgcttgga
aaacctagatatctgtttaaagagaaagaacaacaaatgttgggtcgggacacacctgcc
acaaccaaatgttcccttaaatttggaatacacctcccacctgtgcagcgtgaatcttct
attaatatcagcccgattaaagccttgaacccctatcaaaataattggacgattaagggg
cgcgtgacaaacaagaggaagatgcatcaatatagtacaccaaagtccaccggccaagtg
tttaattttgacatgatagatgatgaaggcactgaaattagaataacttgctttggcgat
gaagtagagatgcattatcatagggttgaagcaggaacatattatactgtatcaaaaggt
tgcattaaagaagctaacacaaaatggaacaagcttaacagtcatcttgagataactttg
gacaacaattcggtattgaagcgttgtgatgctgttgttgatatccaaagaaataattca
cgtttcacaccgattaatgaaattacatactgcaccaacaacattttagttgatgttatt
ggtattgtagtcgctgttggagaaccctcattaattcgcagaaaagatggcagtgaagta
acaaagagaattgtcaaaataaatgacatctcaacttttactatcgatgttaacttatgg
ggagcaacatggcaaggggtgggtgaagatttgaagaacatgcatgcaacccaaacagct
gttgtccttgcagtcagaaatgcccgggttggttatttcaatggaaaggttattaacaca
accactgcaacaactctagctataaacccttctatccctgaaatagagacacttatatca
agaggaaagattctagatgaccttttaatagtgtcttgtgttgttggacaacttaactca
caatacaacaggatgacaatcacagctgttttagaatgtacaagtgttctctctgaaaca
attgaaactactatcagggctactatgaagctcctagatcatacaggcactctttgggct
actgcctttgatgaggttggcacaaatttgctgcaaatatctgccaaggacctttacatg
ctgcagtacgatttaactacaaagagaacacctcagactattatcaagggtgtcctttta
tctagctttgttttcacactttctattacaacagacatgtacaattcagagcccaggctc
aaagcaacaattaccaaagtcacgaatatcaatttccaggctgaatgtactcttttgctt
gcagagattgctcggatgagcacagctatagtgttcccgactaattag
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