KEGG   Cryptomeria japonica (Japanese cedar): 131039375
Entry
131039375         CDS       T10556                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131039375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjf03019]
    131039375
Messenger RNA biogenesis [BR:cjf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     131039375
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_WDR41 Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_ACSF4 Beta-prop_VPS8 Tricorn_2nd Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Ge1_WD40 PROPPIN WD40_like DUF5711 Nucleoporin_N RMC1_N Cytochrom_D1 WD_LRWD1 PAN2_N CFAP43_N B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 131039375
NCBI-ProteinID: XP_057828090
LinkDB
Position
10:490380567..490440828
AA seq 322 aa
MKLAGLKTVQNAHGESIWAVTWVPATESSPPLLLSGSVDESVKIWRGDELEEEACNTGHS
LGVVAVAAHPAGSIAASTSLDSFVRVFDVHSNSTISILDSPPSEAWNMHFHPKGDLLAVA
GGGSASVKLWNTATWRTDISLAIPRGEGTIGKSSDKSGGKFVLAVAWSSDGRRLACSTMD
GTISVFDVARGKFLYNLEGHYMPVRSLVFSPTNSRILYTASDDTHIHCYDVENKSLIYAM
SGHTNWVLSIDFSPDGQAIASGSSDRTVRLWDLSMRASVQTMTNHTDQVWGVAFRPPGDQ
GGRAGRLASVSDDKSISLYDFT
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagcttgcaggtctgaaaactgtgcaaaatgcgcacggggagtccatatgggctgtg
acatgggtgcctgcaacagagtcgagcccgcctttgctgctgagcggatcagtggacgag
agcgtgaagatatggcggggcgacgaattggaagaggaggcgtgcaacaccggacactcg
ctaggagtggtggcagtggcggcgcatccagcgggctcaattgcagcttccacctcgctc
gacagcttcgtccgcgtcttcgacgttcactccaactccaccatctccatccttgattcg
cccccctcggaggcctggaacatgcacttccatcccaagggtgacctattggctgttgct
ggaggaggcagtgcttctgtaaagctatggaatactgctacatggcgaacagatatttct
cttgcaattcccagaggagagggtaccattggaaaatcatcagacaagtctggaggaaaa
tttgttctggctgttgcatggagctcagatggtagaagacttgcatgtagtacaatggat
ggaacaatatctgtttttgatgtggcacgtggcaaatttctatacaatttggagggtcac
tatatgcctgtgagatctcttgtgttttctcccactaattcacggattctatacactgct
tcagatgatacacatattcactgctatgatgtagaaaataagagcctcatctatgccatg
tctggacatacaaattgggttctgagcattgattttagtccagatggtcaagcgattgcc
tcaggatccagtgacaggacagttagactttgggacctttccatgagggcatctgttcaa
acaatgaccaatcatacagatcaagtgtggggtgtagcatttcgtccacctggggatcaa
ggtgggagagcaggcagactcgcaagcgtttctgatgacaaaagtatatcattgtatgac
tttacttga

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