Cryptomeria japonica (Japanese cedar): 131039782
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Entry
131039782 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131039782
03420 Nucleotide excision repair
131039782
03430 Mismatch repair
131039782
03440 Homologous recombination
131039782
03460 Fanconi anemia pathway
131039782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131039782
03032 DNA replication proteins [BR:
cjf03032
]
131039782
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131039782
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131039782
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131039782
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131039782
MMR (mismatch excision repair)
131039782
DSBR (double strand breaks repair)
HR (homologous recombination)
131039782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
tRNA_anti-codon
OB_MEIOB_N
DUF223
Motif
Other DBs
NCBI-GeneID:
131039782
NCBI-ProteinID:
XP_059075444
LinkDB
All DBs
Position
4:751514774..751524185
Genome browser
AA seq
472 aa
AA seq
DB search
MLGRDTPATTKRSLKFGIHLPPVQHESSVNISPIKALNPFQNKWTIKGRVTNKRKMHQYS
TPKSTGQVFSFDMIDSEGTEIRITCFGDVAEMHYHRVEPGTYYTVSKGCVKEANTKWNKL
NSHLEITLDNNSILKRCDDVVECEANNSQFTPINEITYCTNNTLVDVIGIVVAVGEPSLI
RRKDGSEVTKRIVKINDASAFTIDVNLWGETWQGLGEDLKSMHTTQTAVVLAVRNARVGY
FNGKVVNTTTATTLNINPSIPETETLMSRGKISDALLPLSCVAGQLNSQYSRMTITAILE
RTSVLSETVESTIRVVVRIIKTDSFCYPACPLKFNGKECKKKCTQQSDNQWFCSRCQTAV
PECNYKYLLQMKLQDHTGALWATAFDEVGTNILQISAKELYMLQYDLTTQKTPQSIIKHV
LLSSFVFTLSITTDMYNSEPRLKATITKVARIDYQAENALLLGEIAQMTTTA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgttgggtcgagacacacctgccacaactaaacgatcccttaaatttggaattcacctc
ccacctgtgcagcacgaatcttctgttaatatcagcccgattaaagccttgaaccccttc
caaaataaatggacaataaaggggcgtgtgacaaacaagaggaagatgcatcaatacagt
acaccaaagtccactggccaagtatttagctttgacatgatagatagtgaaggtactgaa
attaggataacttgctttggcgatgtagcagaaatgcattatcatagggttgaaccagga
acatattatactgtgtcaaaaggttgcgttaaagaagctaacactaaatggaataagctt
aacagccatcttgagataactttggacaacaattcaatattgaagcgttgtgatgatgtt
gttgaatgtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcacc
aacaacactttagttgatgttattggtattgtagttgctgttggagaaccctcattaatt
cgcaggaaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcagct
tttactatcgatgttaacttatggggagaaacatggcaagggctaggtgaagatttgaag
agcatgcacacaacccaaacagctgttgtccttgcagtcagaaatgctcgtgttggttat
ttcaatggaaaggtggtcaacacaaccacagcaacaaccctaaatataaacccttctata
cctgaaacagagacacttatgtcaagaggaaagatttcagatgcccttttaccgctatca
tgtgttgctggccagcttaactcacaatacagtaggatgacaatcacagctattttagag
cgtacaagtgttctctctgaaacagttgaaagtactattagggttgttgtgagaatcatt
aaaactgattctttttgctatccagcctgccctttgaaatttaatggaaaagaatgtaaa
aagaaatgcacccagcaaagtgataatcaatggttttgttcaagatgtcaaactgctgtg
ccagaatgcaattacaaatacttattgcagatgaagctccaagatcatacaggggctctt
tgggctactgcctttgatgaggttggcacaaatatactgcaaatatctgccaaggagctt
tacatgctgcagtacgatttgactacacaaaaaacgcctcagtccattatcaagcatgtc
cttttgtcttcctttgttttcacactctctattacaacagacatgtacaattcagaaccc
aggctcaaagcaacgataaccaaagttgccagaattgattaccaggctgaaaatgctctt
ttgcttggagagattgctcagatgactacaactgcatag
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