Cryptomeria japonica (Japanese cedar): 131040172
Help
Entry
131040172 CDS
T10556
Name
(RefSeq) vacuolar sorting protein 3 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
131040172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131040172
Membrane trafficking [BR:
cjf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131040172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
CNH
Clathrin
Vps39_1
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
131040172
NCBI-ProteinID:
XP_057829007
LinkDB
All DBs
Position
11:356299983..356432054
Genome browser
AA seq
1037 aa
AA seq
DB search
MCPFNMGKDRSVLMIGTEIDIATIPGGIPGCQFRSAALRKLSHNQILIYIGTENGKIILL
SWDPCSSDSVLLACRAVGRHAVKGIYPLQESNIVAVLAGEFVLLMDGFLHDSLRPLPFTK
GASAMTTRLLSPGQKEGEGEGEGDGHGEEGEGEVSRQAHGFLHKIGRTNRKVSANKLGFG
RKSQTSQLAVAAGRRLFLCEVDSEQKGEGERDIVVREIACPEGVVSMGWVDNSIIVGTQD
GYALIALGEEEEEGDGRSRGKGKGRANLSPIFALPDAAPPPLLKCFHGDRELLLIVDNVG
IVVNVSGQPTAGSVVFKVSPDSIGQTGPYVVTAKNGQVEVYHRKTGFRVQSLSLTVSGHS
VIADDIDGKFVVVATQSKVSCLLKVPVEEQLKELLRKKDYDEAVCLAEECVKEGVGSDAK
ERLSLVHAQAGFQLLFDLQFKEAVDHFLQSEVMQPSEIFPFIMPYPNRWSSMIPRNRYWG
LHPPPQHIEQVIEKGLSNIQRGSLLKKAGITSGIYSVGETIPPNPSSRSALLESATQNII
RYLKACRDKSLAPVMKEGVDTLLMYLYRFLGITEEMEQLASSENSCVVEELEALLKESGH
LRTLAFLYSSKGLQPQALEIWQVLVQRNLTMPLEGSSFARKKGNESTGFTPDQLAAAAEA
AHILEESSDHKLVLKHLAWIIRMDQGLGIKVLTSVKRSRPLPPEEVFSAVDANAVDVHQR
YLQWLIEEQGCKDTQFHTSYALLLAKEAIGASKSVTQSVTLHEDVAQSMADGMWNEEKKV
LNDGFLTAKEVQNPNEESSKQCICLSTRNRLQSFLLNSDKYDAEAVLHLIEGSELWPEQA
ILYKKLGEETSVLQILALKLEDSDAAEQYCAELGRPEAYMQLLDMYLEPGEGKEPMYKAA
VRLLHCHGELLDPLQVLEALSPDMPLQLASETLSRMLRARVHHHRQGQIVQSLSRAVNLD
ARLARFEERSRHVQINDESLCDACHARLGTKLFAMYPNDLVVCYKCFRFYGEHICPVTHR
DFQKDVMFKPSWLVRND
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccatttaatatgggcaaggatcgaagcgttttgatgattggcacggaaatagac
atagcaacaattccagggggcattcctggctgccaatttcgctctgcagcattgcgtaaa
ttatcgcacaatcaaattcttatctacattgggacagaaaacggaaaaatcatcctctta
tcatgggatccttgttcatctgacagtgtgctattagcgtgcagagccgtgggacgtcat
gcagtgaagggcatttatcctctccaggaatcgaatatagtggcagtgcttgcaggtgaa
tttgttttgttgatggatggcttcttgcacgattcccttcgccccttaccctttaccaaa
ggagcctcggccatgaccaccagattgctcagccctgggcagaaagaaggagaaggagaa
ggagaaggagatggacacggagaagagggagaaggagaggtatcaaggcaggcccacggc
tttcttcacaagattggaaggacaaaccggaaagtttctgcaaacaaattaggattcggg
agaaaatcacaaacttcgcagctggctgttgcggcaggcagaaggctatttttatgcgag
gtcgactcagaacagaagggcgagggggaaagggacatagttgtgagagaaattgcgtgc
cctgaaggtgttgtgagcatgggatgggttgacaactccataattgtggggacacaggat
gggtacgctctaattgctctgggggaggaagaggaagagggagatggcaggagcaggggc
aagggtaagggcagggccaatctcagtcccatatttgccttgccagatgcagcccctcct
ccgctgctgaaatgcttccatggtgacagagagctacttctcattgtggacaatgtggga
attgttgtcaatgtctcggggcagcctacggctggaagcgtggtgttcaaagtcagtcca
gattccattgggcaaactggtccctatgtggtgacggccaaaaatgggcaggtggaggtc
taccacaggaaaacaggctttcgagtgcagtcgctttctctcacagtttcaggccattct
gtcattgcagatgatatcgacggaaaattcgttgttgttgctacgcagtcaaaggtgagt
tgcctgctgaaagtacctgtagaagaacaattaaaggaactcttgaggaagaaggattat
gacgaggcagtctgtcttgcagaggagtgtgtgaaagagggggtagggagtgatgctaaa
gagaggctttctcttgttcatgcacaagcaggttttcagttgctttttgatctgcagttc
aaggaagcagtagatcatttcttgcaatcagaagtaatgcagccatcagagattttccca
tttataatgccctatccaaatcgctggtcatccatgattcctagaaatcgttattggggt
ctacatccacctccacagcatatagagcaagtcattgaaaaaggattatcaaatattcaa
agaggatctttgctgaaaaaggcaggtattactagtggaatatattccgtgggtgagact
atacctcctaatccttccagtcgcagtgctttattggagtcggccactcaaaatatcatc
aggtatctcaaggcttgtcgagacaagagtctggcccctgtgatgaaggaaggtgttgat
acacttctgatgtacctatacagattccttggaattacagaagaaatggagcagcttgca
tcatctgaaaacagctgtgttgtggaggaattggaagctttgcttaaggaatctgggcat
ctacgaactcttgcatttttgtattcaagtaaaggtttacaaccacaagcattggaaata
tggcaggttttagtgcaaagaaatttgacaatgcctttggaagggtcttcttttgcaagg
aaaaaaggaaacgaatctactgggtttacacctgatcagctagcagctgctgcggaggca
gctcacattcttgaggagtcgtctgatcacaagctggtcttgaaacatttggcttggatc
atacggatggaccaaggtctggggattaaggttttgacatcagtaaagagatccaggcca
cttccaccagaggaggtgttttcagcagtggatgcaaatgcagttgatgttcatcaaaga
tatctgcaatggctgatagaggagcaaggctgtaaagatactcaatttcatacttcatat
gctcttctgcttgcaaaggaagcaattggtgcttctaaaagtgtcacacagagtgtaact
ttacatgaagatgttgctcagagtatggctgatggcatgtggaatgaagaaaaaaaggtt
ctaaatgacggtttccttacagccaaagaggtgcaaaacccaaatgaagaatctagcaag
caatgcatctgtttgtccactagaaataggctgcagtcatttttattaaattcagacaaa
tatgatgctgaagcagttcttcacctcatagagggatcagaactttggccagaacaggca
atattgtacaagaaactgggagaagaaacatctgtgcttcaaattctagccctaaagctg
gaggatagtgatgcagcagaacaatattgtgcagagctgggcagacctgaggcttatatg
cagttgcttgacatgtatctagaacctggagaaggaaaagaaccaatgtacaaggctgct
gtacgcctgctccattgtcacggcgaattattggatcctctgcaagttctagaggcctta
tccccagacatgccacttcaacttgcatctgaaacactttcaagaatgttaagggctcga
gttcatcaccatcgtcaagggcagattgtacaaagcctttcacgtgctgtcaatttggat
gcaagactagcaaggtttgaagagcgatcacgacatgtacagataaatgatgaaagcctt
tgtgatgcttgtcatgctcgtttgggaactaagctatttgcaatgtatcccaatgatttg
gtggtgtgttataagtgctttcgattctatggggaacacatctgtcctgtcacccaccgt
gattttcagaaggatgtcatgttcaagccaagttggcttgttagaaatgattga
DBGET
integrated database retrieval system
