Cryptomeria japonica (Japanese cedar): 131040589
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Entry
131040589 CDS
T10556
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131040589
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131040589
PBAF complex
131040589
GBAF(ncBAF) complex
131040589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131040589
NCBI-ProteinID:
XP_057829520
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Position
4:complement(215690099..215760007)
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AA seq
806 aa
AA seq
DB search
MAANPTIPPAGGIRIKFKRKRETSSIHSRDVENSFRGDEQENRELPGPPAPPALRRQARE
DSPIPLSETGEPMEVYPGRGVQISGFPVTIKQKPGRPHASIRALVAADRAIYTAELLDER
VKSSVPILENISHGQIQTLSTIPEGDLEVAASSSYGSSGGMIEVKGVLKRFKASGQNVEQ
LLVFPMHADWFSLKHVHRMERQVVPEYFSGKFVDRTPKVYMEIRNTIVREYMENPEKALS
LTDCQGLCNIDAKDLTRIFEFLDHWGIINYCATNDLRNHGLSWAGTKETLQENTNGEIQV
MPGSLRSNTSLIRFEMPRTKFRLDNGPLSPGCSNGAISDLDRRIQERLLEQRCSSCSRYC
TDLFYQSQKETDVILCSDCFNDGKPAIGMATVDFVRTDASRDAGDADGNNWTDEETLLLL
EALEIYNDNWNEIAEHVGTKSKAQCILHFIRLPMEEGLLDNIDVPDMSMKPNASDEVHET
AKAFSLDVKCNGNSGGLSPAEFEAENRMVFQNSGNPVMSLVAFLASAVGPRVAGACARAA
LVSLSKDDNNTETIDDNTSSKEGYALSDRLTSENTLREDGKQELALSTLPHKDKELDESQ
TKVHASSGPSVLPPEKVKLAAMAGLSAAAVKAKLFADHEERDIQRLAANIVSHQLKRVEI
KLKQFAEIETMLLKECEQVERARQRFSADRLRFMSSHFGSGGSSAVAAGAVSVVPAMNNR
PAIPPTLPSASHSGFGPTTHPAMPFMTRPSMFPFGPGGVGSSVPLSAMQSFSGGSPGSIM
MGSSASNSNVAHNMLRPVTGTNTTAN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaccccaccattcctccagcagggggcataaggatcaaattcaagagaaaa
cgagaaacatcatccattcattccagggatgtcgaaaacagcttcagaggggatgagcag
gaaaacagagagcttcccggccccccggcaccccctgcccttagaagacaggcaagggaa
gattctcctataccgctctcggaaactggtgagcccatggaggtttacccaggtagaggc
gttcagatttctggttttccggtcactattaagcagaagccgggacgtcctcatgcgtca
attcgtgccctagttgcggcggaccgagcaatttatacggccgagttgttagatgagcgg
gttaaatcttctgtgccgattttggaaaatatatcccatggtcaaatacagaccttatct
acgatacccgaaggagacctggaggttgccgcttcgagttcttacggctcctcggggggc
atgattgaagtcaagggtgtgttaaagcggtttaaggcatcggggcagaacgtggagcaa
ttgcttgtctttccaatgcacgcagactggttttccctcaagcatgtgcacagaatggag
cgacaagttgttccagagtatttctctgggaagtttgttgatcgcacgccaaaagtatac
atggaaatcagaaacactatcgtcagagagtatatggaaaatcctgaaaaggctctatca
ttgactgattgtcaaggattgtgtaatatagacgcaaaggatttgactagaatttttgag
tttttggatcactggggaattataaattactgtgcaacaaatgatctgaggaatcatgga
ctttcatgggcagggaccaaagagactcttcaggaaaatacaaacggagaaatacaagtt
atgcctggttcattaaggagcaacacgagtttgattcgttttgaaatgcctcgtacaaag
ttcagactagataatggtcctttatcaccgggatgctctaatggagccatttctgatttg
gatcgtcgaattcaagagcgtctgttagaacagcgttgttcttcatgctcaagatactgt
actgacctcttctatcagtctcagaaagagaccgatgtaatattatgttcagattgtttc
aatgatgggaaaccagctattggaatggcaacagtagattttgttcggacagatgcttca
agggatgctggggatgctgatggaaacaattggactgatgaggagacattgctgcttctt
gaagctttggaaatttataatgataactggaatgaaattgcagagcatgtggggacaaaa
tcaaaagctcaatgcatactacatttcattcgccttcctatggaggagggattgctagac
aatattgatgtccctgacatgagcatgaagcccaatgcttcagatgaggttcatgaaact
gcaaaagcattttctttagatgtgaaatgcaatggaaattctggaggtttgagccctgca
gaattcgaggctgagaatagaatggtattccaaaattctggtaatccagtcatgtccctg
gttgccttcctagcttctgcagttggaccacgtgtcgctggagcttgtgcacgtgcggct
ttagtttctttatccaaagatgataacaatacagaaactattgatgataacacctcaagt
aaagaaggttatgctctcagtgacaggttgacttcagagaacacattgagggaagacgga
aaacaggagttggcattaagcactttgcctcataaagacaaggaattggatgaatcacag
accaaggttcatgcatccagtggcccatcggttttaccacctgaaaaggtcaaattggct
gccatggcaggtctatctgctgcagcagtgaaggcgaaactgtttgctgatcatgaggag
agggatatccaacgccttgcagcaaacatagttagtcaccagttaaagagagttgagatc
aaattgaaacagtttgcagagatcgagactatgttgttgaaggagtgcgagcaggtggaa
agggcaaggcagagattttcagcagaccgtttgcgttttatgtcaagtcattttggttct
ggtgggtcatctgctgtggctgcaggggctgtatcagtagtacctgcaatgaacaacaga
cctgcaattccaccaaccttaccatcagcttcacattctggttttggacccacaactcat
ccagctatgccctttatgaccagaccatccatgttcccatttggaccaggtggtgttgga
tcatctgtacccttgtcagcaatgcagtctttctcaggtggatcccctggatctattatg
atgggttccagtgcttcaaattccaatgttgctcataatatgctgagacctgttactgga
actaacacaactgcaaattaa
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